Non-Coding RNA Search

Liv1-LVR010028E11

Sequence:


               
               TGGATTTTTGGATTGTCTCCTTCCTAAACTGGCCAGTCCTAGACAGTTCAGACCATTAGT
TATTTTTCCTGCTCTCCAGTTTTTTCCTATTATTCTTAGGTTTTCAAGTATTTTAAAGCT
GAGGATATTGGTATCTGAGATATTGCCTGGTTAGGGTTCGGCATTGTGCCCGAATTTGTT
GGGCCTCTCAGGGCCTGAGTTCTCTGCTTTAACAAATGAGCTACAGTTCTCAAGAGATCA
GTGAAGCTTGTTTGTTGATCCTGTATTCTCTTCCAGAGGAAGTAGATCTTTGAGAATGTC
TAAGGAAGGGGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATTAAGTGTTTTGGTTT
TGATATGGATTATACCCTTGCTGGTGAGTAGCACTTTCTGATTGCTTAAGGACTGTTACT
TTGGATTTAACACAATAGGCCATTCAGTAAACATTTGTTGATGTAGTCATGTATTTAGCT
GCCAGAAGCTCTTTTTATCATGCTGTTTCCTTTGAGATTTGTGAATATTGAAATTACCAG
ATGTCCTTGAGATTTAGGTTGTTCAGATAGGTAGAACAAGTGCTAAATTATATTAGAGAC
CCTGGTAAGAAATGACATGATGAGATTATACATTAATGTGTTTATGTGGGCACTTTTTTG
GCTTTTAACTCTAACAAGCTATTCTTCAAGGATGGAATTTTGTATCTATCACAGGTAAAC
TTTCATCAGTTAATTTTTTTTTTTTTTTTGGTCTTTTTAGGCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATTTTTGGATTGTCTCCTTCCTAAACTGGCCAGTCCTAGACAGTTCAGACCATTAGT
TATTTTTCCTGCTCTCCAGTTTTTTCCTATTATTCTTAGGTTTTCAAGTATTTTAAAGCT
GAGGATATTGGTATCTGAGATATTGCCTGGTTAGGGTTCGGCATTGTGCCCGAATTTGTT
GGGCCTCTCAGGGCCTGAGTTCTCTGCTTTAACAAATGAGCTACAGTTCTCAAGAGATCA
GTGAAGCTTGTTTGTTGATCCTGTATTCTCTTCCAGAGGAAGTAGATCTTTGAGAATGTC
TAAGGAAGGGGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATTAAGTGTTTTGGTTT
TGATATGGATTATACCCTTGCTGGTGAGTAGCACTTTCTGATTGCTTAAGGACTGTTACT
TTGGATTTAACACAATAGGCCATTCAGTAAACATTTGTTGATGTAGTCATGTATTTAGCT
GCCAGAAGCTCTTTTTATCATGCTGTTTCCTTTGAGATTTGTGAATATTGAAATTACCAG
ATGTCCTTGAGATTTAGGTTGTTCAGATAGGTAGAACAAGTGCTAAATTATATTAGAGAC
CCTGGTAAGAAATGACATGATGAGATTATACATTAATGTGTTTATGTGGGCACTTTTTTG
GCTTTTAACTCTAACAAGCTATTCTTCAAGGATGGAATTTTGTATCTATCACAGGTAAAC
TTTCATCAGTTAATTTTTTTTTTTTTTTTGGTCTTTTTAGGCCTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               87-310, - strand, RNAz p=0.969357
               

               
               132-247, + strand, RNAz p=0.981399

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-310, - strand, RNAz p=0.969357
               

               
               132-247, + strand, RNAz p=0.981399

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               7-310, gnl|bosTau2|chr26 (17568277-17567973)
               

               
               7-310, gnl|canFam2|chr28 (18589178-18590140)
               

               
               7-310, gnl|hg17|chr10 (104902408-104903340)
               

               
               7-310, gnl|Hg17|chr10 (104903344-104903037)
               

               
               7-310, gnl|loxAfr1|scaffold_17008 (8273-7326)
               

               
               7-310, gnl|mm7|chr19 (46837234-46838071)
               

               
               7-310, gnl|Mm7|chr19 (46838075-46837788)
               

               
               7-310, gnl|monDom2|scaffold_14 (60132194-60131252)
               

               
               7-310, gnl|oryCun1|scaffold_62849 (6-910)
               

               
               7-310, gnl|panTro1|chr8 (106666621-106667554)
               

               
               7-310, gnl|rheMac2|chr9 (102840300-102841231)
               

               
               7-310, gnl|rn3|chr1 (252515048-252515876)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-310, gnl|bosTau2|chr26 (17568277-17567973)
               

               
               7-310, gnl|canFam2|chr28 (18589178-18590140)
               

               
               7-310, gnl|hg17|chr10 (104902408-104903340)
               

               
               7-310, gnl|Hg17|chr10 (104903344-104903037)
               

               
               7-310, gnl|loxAfr1|scaffold_17008 (8273-7326)
               

               
               7-310, gnl|mm7|chr19 (46837234-46838071)
               

               
               7-310, gnl|Mm7|chr19 (46838075-46837788)
               

               
               7-310, gnl|monDom2|scaffold_14 (60132194-60131252)
               

               
               7-310, gnl|oryCun1|scaffold_62849 (6-910)
               

               
               7-310, gnl|panTro1|chr8 (106666621-106667554)
               

               
               7-310, gnl|rheMac2|chr9 (102840300-102841231)
               

               
               7-310, gnl|rn3|chr1 (252515048-252515876)

	87-310, - strand, RNAz p=0.969357
	132-247, + strand, RNAz p=0.981399

	7-310, gnl\|bosTau2\|chr26 (17568277-17567973)
	7-310, gnl\|canFam2\|chr28 (18589178-18590140)
	7-310, gnl\|hg17\|chr10 (104902408-104903340)
	7-310, gnl\|Hg17\|chr10 (104903344-104903037)
	7-310, gnl\|loxAfr1\|scaffold_17008 (8273-7326)
	7-310, gnl\|mm7\|chr19 (46837234-46838071)
	7-310, gnl\|Mm7\|chr19 (46838075-46837788)
	7-310, gnl\|monDom2\|scaffold_14 (60132194-60131252)
	7-310, gnl\|oryCun1\|scaffold_62849 (6-910)
	7-310, gnl\|panTro1\|chr8 (106666621-106667554)
	7-310, gnl\|rheMac2\|chr9 (102840300-102841231)
	7-310, gnl\|rn3\|chr1 (252515048-252515876)