Non-Coding RNA Search

Liv1-LVR010034D04

Sequence:


               
               AGTTGCGAGCCTGAGGAGGTACCTTCCTGAGGCCCGGGGGTAGGGCGTGTTGGGACCCGG
GGCCCCCAGCGGCTCTAGACGGCTGCTAGCCAAAGGAGGACCTGGAGTGGCGGCGCAGAG
AGCGCGTCCCGCCAGAGGACAGCCCCTCTGCTTGTCTCCCGAGGCCGGCGCGAGAGAACC
GCCGAGCCCGCCCGGGCCTGCACCTGGCGAGGCTTCTTCAGGAGCGTCCTCAAAATCAAG
CGTTTCTGAAGCCCGGGACAGATGCTTTCTGTGTTGTTCTAAAACACGCTTGTAAGGAGG
AGAATCCTCGGTTCAGAAGAGCTGAGGAGAGGCCACAGTTGAACTCAGACACCAGGAGAG
AGAGGCTTTGAATCTGCCTGAAAGCCATCCTATTTTTTGCTGACAATGTGCAGGTACATT
GCTTTTGCTGTGGACCCCAGCCTTTTGCCAGCCATGTGTATATCCCACCTAGGCTCCTCA
TGCCTTGCTTCTAGTGGCTTTTGAGTCTGTGCTAACATGAATGAAAAAACTGCTTTGACA
CTCTACGTATTGATGATGAGGCCTGTCAGCCACATGCAGTAGTAAATAATACTTTGTATG
ACTTCGTGCCTTTCACATCAACAAGTCAGTTGAACTTTGGTGGCAGTGTCGTTGTCCCTC
ACTGACAGGGTGGTCTGTTAGGACTGGAAAGAGTTAGGTTATAGGACTGGGCTAGAGCAA
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGCGAGCCTGAGGAGGTACCTTCCTGAGGCCCGGGGGTAGGGCGTGTTGGGACCCGG
GGCCCCCAGCGGCTCTAGACGGCTGCTAGCCAAAGGAGGACCTGGAGTGGCGGCGCAGAG
AGCGCGTCCCGCCAGAGGACAGCCCCTCTGCTTGTCTCCCGAGGCCGGCGCGAGAGAACC
GCCGAGCCCGCCCGGGCCTGCACCTGGCGAGGCTTCTTCAGGAGCGTCCTCAAAATCAAG
CGTTTCTGAAGCCCGGGACAGATGCTTTCTGTGTTGTTCTAAAACACGCTTGTAAGGAGG
AGAATCCTCGGTTCAGAAGAGCTGAGGAGAGGCCACAGTTGAACTCAGACACCAGGAGAG
AGAGGCTTTGAATCTGCCTGAAAGCCATCCTATTTTTTGCTGACAATGTGCAGGTACATT
GCTTTTGCTGTGGACCCCAGCCTTTTGCCAGCCATGTGTATATCCCACCTAGGCTCCTCA
TGCCTTGCTTCTAGTGGCTTTTGAGTCTGTGCTAACATGAATGAAAAAACTGCTTTGACA
CTCTACGTATTGATGATGAGGCCTGTCAGCCACATGCAGTAGTAAATAATACTTTGTATG
ACTTCGTGCCTTTCACATCAACAAGTCAGTTGAACTTTGGTGGCAGTGTCGTTGTCCCTC
ACTGACAGGGTGGTCTGTTAGGACTGGAAAGAGTTAGGTTATAGGACTGGGCTAGAGCAA
T

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               220-337, + strand, RNAz p=0.909852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-337, + strand, RNAz p=0.909852

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               220-416, gnl|bosTau2|chr26 (4790599-4790403)
               

               
               220-416, gnl|dasNov1|scaffold_14290 (3769-3545)
               

               
               220-416, gnl|echTel1|scaffold_276194 (53502-53695)
               

               
               220-416, gnl|hg17|chr10 (54315673-54315906)
               

               
               220-416, gnl|Hg17|chr10 (54315698-54315897)
               

               
               220-416, gnl|loxAfr1|scaffold_21372 (20079-19826)
               

               
               220-416, gnl|Mm7|chr10 (71089829-71090014)
               

               
               220-416, gnl|oryCun1|scaffold_215434 (7668-7876)
               

               
               220-416, gnl|panTro1|chr8 (55210343-55210576)
               

               
               220-416, gnl|rheMac2|chr9 (84381933-84381700)
               

               
               220-416, gnl|rn3|chr20 (17853746-17853533)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-416, gnl|bosTau2|chr26 (4790599-4790403)
               

               
               220-416, gnl|dasNov1|scaffold_14290 (3769-3545)
               

               
               220-416, gnl|echTel1|scaffold_276194 (53502-53695)
               

               
               220-416, gnl|hg17|chr10 (54315673-54315906)
               

               
               220-416, gnl|Hg17|chr10 (54315698-54315897)
               

               
               220-416, gnl|loxAfr1|scaffold_21372 (20079-19826)
               

               
               220-416, gnl|Mm7|chr10 (71089829-71090014)
               

               
               220-416, gnl|oryCun1|scaffold_215434 (7668-7876)
               

               
               220-416, gnl|panTro1|chr8 (55210343-55210576)
               

               
               220-416, gnl|rheMac2|chr9 (84381933-84381700)
               

               
               220-416, gnl|rn3|chr20 (17853746-17853533)

	220-416, gnl\|bosTau2\|chr26 (4790599-4790403)
	220-416, gnl\|dasNov1\|scaffold_14290 (3769-3545)
	220-416, gnl\|echTel1\|scaffold_276194 (53502-53695)
	220-416, gnl\|hg17\|chr10 (54315673-54315906)
	220-416, gnl\|Hg17\|chr10 (54315698-54315897)
	220-416, gnl\|loxAfr1\|scaffold_21372 (20079-19826)
	220-416, gnl\|Mm7\|chr10 (71089829-71090014)
	220-416, gnl\|oryCun1\|scaffold_215434 (7668-7876)
	220-416, gnl\|panTro1\|chr8 (55210343-55210576)
	220-416, gnl\|rheMac2\|chr9 (84381933-84381700)
	220-416, gnl\|rn3\|chr20 (17853746-17853533)