Non-Coding RNA Search

Liv1-LVR010036A05

Sequence:


               
               AAGTGCCAGAGGAGGCTGGTGGCTCCCTGGCGCCTGCCTGGTCTGCTCAGCCCCTGTGAT
CTCCTCCCCGCGGGGCTCCTTAGAGCTGGCAGCGCAGCGGGGATAAGTGAGGCCAGCGAT
CGCACCTTACATGGCCATCCCCAAGGCCGCCCGGAATCCCTGGGATTTACGCAGACTTCT
GGAAGATTTGGAGCAAGTGCACGTCACCTGCTGCCGCCACAAGTGTGCCTGGGCTTCTGC
AGCCTCCGTCTTGTGACCAAGGAATTTTTAAATGGAAGCTCTGAGCTCACAAAGAAGAAA
ATGTCTCCCTGATGTCACACAGTTGCTGCCAATTCATCAGCGCAAAGCTAAAGGTCAGAG
AGGGGGAAGCCACTGCTCCAGGGTCCCGTGGCTGCTCCCTCAGACGGGGCTTCCCTTCCA
GCAGGCTTCCCGCCAGCCCCCACCCGGGGCCAGCCCCGGGAAGCCCAGGCCAGGGCTGTT
TGCATTTGCAGGGCAGGCACCGAGGCGGTTCTAACGCCACTCACCACAGCTCCTGCACTT
CCCTTCTCATACATTAACCCACTTTCGTCTTCCCAGCCCCTGTCCTGCCACCCCTCTGTT
CTGTGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGCCAGAGGAGGCTGGTGGCTCCCTGGCGCCTGCCTGGTCTGCTCAGCCCCTGTGAT
CTCCTCCCCGCGGGGCTCCTTAGAGCTGGCAGCGCAGCGGGGATAAGTGAGGCCAGCGAT
CGCACCTTACATGGCCATCCCCAAGGCCGCCCGGAATCCCTGGGATTTACGCAGACTTCT
GGAAGATTTGGAGCAAGTGCACGTCACCTGCTGCCGCCACAAGTGTGCCTGGGCTTCTGC
AGCCTCCGTCTTGTGACCAAGGAATTTTTAAATGGAAGCTCTGAGCTCACAAAGAAGAAA
ATGTCTCCCTGATGTCACACAGTTGCTGCCAATTCATCAGCGCAAAGCTAAAGGTCAGAG
AGGGGGAAGCCACTGCTCCAGGGTCCCGTGGCTGCTCCCTCAGACGGGGCTTCCCTTCCA
GCAGGCTTCCCGCCAGCCCCCACCCGGGGCCAGCCCCGGGAAGCCCAGGCCAGGGCTGTT
TGCATTTGCAGGGCAGGCACCGAGGCGGTTCTAACGCCACTCACCACAGCTCCTGCACTT
CCCTTCTCATACATTAACCCACTTTCGTCTTCCCAGCCCCTGTCCTGCCACCCCTCTGTT
CTGTGGCCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               146-263, - strand, RNAz p=0.689859
               

               
               344-459, - strand, RNAz p=0.633218

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-263, - strand, RNAz p=0.689859
               

               
               344-459, - strand, RNAz p=0.633218

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-610, gnl|bosTau2|chr23 (8726628-8726039)
               

               
               1-610, gnl|Hg17|chr6 (37206897-37207502)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr23 (8726628-8726039)
               

               
               1-610, gnl|Hg17|chr6 (37206897-37207502)

	146-263, - strand, RNAz p=0.689859
	344-459, - strand, RNAz p=0.633218

	1-610, gnl\|bosTau2\|chr23 (8726628-8726039)
	1-610, gnl\|Hg17\|chr6 (37206897-37207502)