Non-Coding RNA Search

Liv1-LVR010037H08

Sequence:


               
               CCTGTTCCTACTGGAATTGGATTGTTTGCTATTTATTTTTTTTAACTTCTGTCAAGGTCA
CTACCGTAACAGGAAAACCCTGCCTGAGCAGCAGGTGTTCTTCGTCCACTCGGCCCAGAA
GAGCAATCTGCAGCCACACCTTCTGTGACAGGGCCTCACCGTGGCAGTTCACTTTCGAGA
AAGCTGTCAGCGTGACTGGGCCTAGGGGAAAGAAGCCCTGGGTCTTTCTGCCCCCCCCCA
CGCCCCCACCCCCACAAATGCGTTGTCATCAGACCTGTGGGCTCGGCCCTCCCTGCCTGG
TGCTCCAGCCCTTTCAGGCCACCTGCCTTCCGGAATCGTCCCGTGCTTTGGGCATCCTTC
CCTCTCTGTAGTCCTCCACCTCCCCGTCTGGTTGTCATTCCCTCTTTGTATCTGTCATCA
ACTTTGCGTTTGCAAACATTCCCTAGCTGCCTGCACTGTGCCAGGACCTGTACCAGGCAT
AGCAGTGAGTAAACAGCAGTGCCTGTCTCCGGGGGGTGCATGACTGAGTAGGAAGACAGA
GTTGCAGCTATGCAACAAAACTTGTTCTCAGGAAACTTCTTTGGTGACAGGTACAGGGCT
CGAAAATGGGCACACCCGCTGTGGAACCACTAGGAAAAATGACCGATTCTGCCTGAGAAT
GTTTGGGCAGAGGCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTTCCTACTGGAATTGGATTGTTTGCTATTTATTTTTTTTAACTTCTGTCAAGGTCA
CTACCGTAACAGGAAAACCCTGCCTGAGCAGCAGGTGTTCTTCGTCCACTCGGCCCAGAA
GAGCAATCTGCAGCCACACCTTCTGTGACAGGGCCTCACCGTGGCAGTTCACTTTCGAGA
AAGCTGTCAGCGTGACTGGGCCTAGGGGAAAGAAGCCCTGGGTCTTTCTGCCCCCCCCCA
CGCCCCCACCCCCACAAATGCGTTGTCATCAGACCTGTGGGCTCGGCCCTCCCTGCCTGG
TGCTCCAGCCCTTTCAGGCCACCTGCCTTCCGGAATCGTCCCGTGCTTTGGGCATCCTTC
CCTCTCTGTAGTCCTCCACCTCCCCGTCTGGTTGTCATTCCCTCTTTGTATCTGTCATCA
ACTTTGCGTTTGCAAACATTCCCTAGCTGCCTGCACTGTGCCAGGACCTGTACCAGGCAT
AGCAGTGAGTAAACAGCAGTGCCTGTCTCCGGGGGGTGCATGACTGAGTAGGAAGACAGA
GTTGCAGCTATGCAACAAAACTTGTTCTCAGGAAACTTCTTTGGTGACAGGTACAGGGCT
CGAAAATGGGCACACCCGCTGTGGAACCACTAGGAAAAATGACCGATTCTGCCTGAGAAT
GTTTGGGCAGAGGCTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               15-104, + strand, RNAz p=0.971042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-104, + strand, RNAz p=0.971042

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               15-218, gnl|bosTau2|chr15 (29775755-29775960)
               

               
               15-218, gnl|canFam2|chr21 (28831652-28831243)
               

               
               15-218, gnl|dasNov1|scaffold_190022 (3387-2979)
               

               
               15-218, gnl|hg17|chr11 (71707180-71707588)
               

               
               15-218, gnl|Hg17|chr11 (71707394-71707192)
               

               
               15-218, gnl|mm7|chr7 (97809201-97808793)
               

               
               15-218, gnl|Mm7|chr7 (97808984-97809187)
               

               
               15-218, gnl|monDom2|scaffold_74 (6150135-6149712)
               

               
               15-218, gnl|oryCun1|scaffold_198776 (42950-43358)
               

               
               15-218, gnl|panTro1|chr9 (72975735-72976143)
               

               
               15-218, gnl|rheMac2|chr14 (70390528-70390935)
               

               
               15-218, gnl|rn3|chr1 (159299678-159299270)
               


               
               304-659, gnl|bosTau2|chr15 (29776109-29776446)
               

               
               304-659, gnl|Hg17|chr11 (71707037-71706693)
               

               
               304-659, gnl|Mm7|chr7 (97809296-97809628)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-218, gnl|bosTau2|chr15 (29775755-29775960)
               

               
               15-218, gnl|canFam2|chr21 (28831652-28831243)
               

               
               15-218, gnl|dasNov1|scaffold_190022 (3387-2979)
               

               
               15-218, gnl|hg17|chr11 (71707180-71707588)
               

               
               15-218, gnl|Hg17|chr11 (71707394-71707192)
               

               
               15-218, gnl|mm7|chr7 (97809201-97808793)
               

               
               15-218, gnl|Mm7|chr7 (97808984-97809187)
               

               
               15-218, gnl|monDom2|scaffold_74 (6150135-6149712)
               

               
               15-218, gnl|oryCun1|scaffold_198776 (42950-43358)
               

               
               15-218, gnl|panTro1|chr9 (72975735-72976143)
               

               
               15-218, gnl|rheMac2|chr14 (70390528-70390935)
               

               
               15-218, gnl|rn3|chr1 (159299678-159299270)
               


               
               304-659, gnl|bosTau2|chr15 (29776109-29776446)
               

               
               304-659, gnl|Hg17|chr11 (71707037-71706693)
               

               
               304-659, gnl|Mm7|chr7 (97809296-97809628)

	15-218, gnl\|bosTau2\|chr15 (29775755-29775960)
	15-218, gnl\|canFam2\|chr21 (28831652-28831243)
	15-218, gnl\|dasNov1\|scaffold_190022 (3387-2979)
	15-218, gnl\|hg17\|chr11 (71707180-71707588)
	15-218, gnl\|Hg17\|chr11 (71707394-71707192)
	15-218, gnl\|mm7\|chr7 (97809201-97808793)
	15-218, gnl\|Mm7\|chr7 (97808984-97809187)
	15-218, gnl\|monDom2\|scaffold_74 (6150135-6149712)
	15-218, gnl\|oryCun1\|scaffold_198776 (42950-43358)
	15-218, gnl\|panTro1\|chr9 (72975735-72976143)
	15-218, gnl\|rheMac2\|chr14 (70390528-70390935)
	15-218, gnl\|rn3\|chr1 (159299678-159299270)

	304-659, gnl\|bosTau2\|chr15 (29776109-29776446)
	304-659, gnl\|Hg17\|chr11 (71707037-71706693)
	304-659, gnl\|Mm7\|chr7 (97809296-97809628)