Non-Coding RNA Search

Liv1-LVR010042B11

Sequence:


               
               ATTGAGACGCTGTCCCATTTCCTGGATGAGGTTGGCCGCCTGCTGGCGGTACGAGAGCTC
TTTATCTGCCTCCACTCCGCAGCGGCGGCTCGGCGTGTTCTCCAGCTGTTCTCGAGTAAA
GAACCAGCGAGAAGAAGCTCCACGGCCCGACGCCATGACACTTCCTCCTCCGCCCGCTCC
CTCACCCACCCCCCCTCCCTTCCCGGCTCGCGGACTCCCCGCCAAGGCCGCGCGACCCCG
CCCCACTCCGCTCGCCGTAGACCACGCACCGCCCCTCGTCACCCCCTCTTCCGCCCGTGC
GCGTGCGCGCGGGGCCGCCCTACCGGTTCGCTCTAGTCTTTTGCTTTCTTTTTAATGACC
CCGGCCTCGCTCTTGTTCACGGGACCACAATGCTCCGCGCCTCTTGTCATTTGGAGGCGC
CCAAAGGTGGGGGGTCGGCTAGAAGGAAAAGGTCGGCGCGGTGCATGCCGGGTCTGGGAT
GGACTGGGCGGAGGGGCTGGAAGTAGAAGAAGGGAGAGGGTGGTGTCGAGTTGGGTGGCA
GGAGCCTCGGCGTGGACTCTTGAATCCCTGCGGGTGCTTGGCTTGGGCGTCTGGTGGCGC
TTTAAGAGGAGAACATTCTGTCGCAATCGCAACCTCCATTTTCTTCTAGTGTCGGTTTGC
GCAGTCTCGTAGGCTTCCGAGTCCTGAGTCCCCGCCAGATGGCCTCCGCCCAGCGCTCGG
CTCTGGGAAGGAGCTGCTTGGGAAAAAAGTGACTGAAAAATGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGAGACGCTGTCCCATTTCCTGGATGAGGTTGGCCGCCTGCTGGCGGTACGAGAGCTC
TTTATCTGCCTCCACTCCGCAGCGGCGGCTCGGCGTGTTCTCCAGCTGTTCTCGAGTAAA
GAACCAGCGAGAAGAAGCTCCACGGCCCGACGCCATGACACTTCCTCCTCCGCCCGCTCC
CTCACCCACCCCCCCTCCCTTCCCGGCTCGCGGACTCCCCGCCAAGGCCGCGCGACCCCG
CCCCACTCCGCTCGCCGTAGACCACGCACCGCCCCTCGTCACCCCCTCTTCCGCCCGTGC
GCGTGCGCGCGGGGCCGCCCTACCGGTTCGCTCTAGTCTTTTGCTTTCTTTTTAATGACC
CCGGCCTCGCTCTTGTTCACGGGACCACAATGCTCCGCGCCTCTTGTCATTTGGAGGCGC
CCAAAGGTGGGGGGTCGGCTAGAAGGAAAAGGTCGGCGCGGTGCATGCCGGGTCTGGGAT
GGACTGGGCGGAGGGGCTGGAAGTAGAAGAAGGGAGAGGGTGGTGTCGAGTTGGGTGGCA
GGAGCCTCGGCGTGGACTCTTGAATCCCTGCGGGTGCTTGGCTTGGGCGTCTGGTGGCGC
TTTAAGAGGAGAACATTCTGTCGCAATCGCAACCTCCATTTTCTTCTAGTGTCGGTTTGC
GCAGTCTCGTAGGCTTCCGAGTCCTGAGTCCCCGCCAGATGGCCTCCGCCCAGCGCTCGG
CTCTGGGAAGGAGCTGCTTGGGAAAAAAGTGACTGAAAAATGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8099632|gb|AAF72184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8099632|gb|AAF72184.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-239, - strand, RNAz p=0.97167
               

               
               392-510, - strand, RNAz p=0.509291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.97167
               

               
               392-510, - strand, RNAz p=0.509291

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_058241, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_058241, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-544, gnl|bosTau2|chr2 (38570641-38571180)
               

               
               1-544, gnl|Hg17|chr2 (135510312-135509748)
               

               
               1-544, gnl|Mm7|chr1 (127653911-127653396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-544, gnl|bosTau2|chr2 (38570641-38571180)
               

               
               1-544, gnl|Hg17|chr2 (135510312-135509748)
               

               
               1-544, gnl|Mm7|chr1 (127653911-127653396)

	80-239, - strand, RNAz p=0.97167
	392-510, - strand, RNAz p=0.509291

	1-544, gnl\|bosTau2\|chr2 (38570641-38571180)
	1-544, gnl\|Hg17\|chr2 (135510312-135509748)
	1-544, gnl\|Mm7\|chr1 (127653911-127653396)