Non-Coding RNA Search

Liv1-LVR010042E07

Sequence:


               
               TTTTTTCCGAGTCTCATTGCAGCTGGACCAGAGTTAAGGAACAGAATCTTGCTGAACTCT
TGCTGAGCCCTGCCTAGGCCCTCACCCCTGGGTCAGGAAATCTGGAGAATGAGGCCCTTC
AGCCCTGAGGTCAGCAGGGGCAAGTGGGCAGACTGGGGGTGTAAGGAGGGCTGGGCTGAC
CTTTCCTATGTCATTGAGCATCCTTACCTTCAATGGCTGGCCAGGATTCCTGGGGGAAGA
GACAGGAAAGCCCCCACTTGTTTCTGTCAGCCGGTCAGCCTGGAGGCTGAGGGCCTAGCC
CTCAGCTGCATTTCTCTAGATAGCTATTATGGTTTCTGCGGCCCTTGGGAAGGCGGGTGG
GCAAGCTTAGAACAGGACTAGGCCTGTGGGAGAGAGAGGGCAGTGGCCTGCCCAAGAGGC
AACTCATATGAGCCCTCTAGTGGTCATGGTCCTCTCAGTGCCTCTCCTTTGCCCTCTGAC
CTCCCTGAGCCCCACTGGTCAATAGCTCTCTGAAACCAGAACAGAGATGGATTAATGAGC
AAGGGACTTGGCCCGCCTGCTCTCGGTAGGGGTCAGAGAATTCAAAGCCTGCTCTCAGCT
CTGCCTCCCCTGGCCAGGTTTCCCTAGACCTGCCCTGTGCCATGGCAGCTCACCTGCTTC
CCATCTGCACCCTCTTCCTGAACTTGCTCAGCGTGGCCCAAGGATCCAGGGACCCCGTGG
TACCCAACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCCGAGTCTCATTGCAGCTGGACCAGAGTTAAGGAACAGAATCTTGCTGAACTCT
TGCTGAGCCCTGCCTAGGCCCTCACCCCTGGGTCAGGAAATCTGGAGAATGAGGCCCTTC
AGCCCTGAGGTCAGCAGGGGCAAGTGGGCAGACTGGGGGTGTAAGGAGGGCTGGGCTGAC
CTTTCCTATGTCATTGAGCATCCTTACCTTCAATGGCTGGCCAGGATTCCTGGGGGAAGA
GACAGGAAAGCCCCCACTTGTTTCTGTCAGCCGGTCAGCCTGGAGGCTGAGGGCCTAGCC
CTCAGCTGCATTTCTCTAGATAGCTATTATGGTTTCTGCGGCCCTTGGGAAGGCGGGTGG
GCAAGCTTAGAACAGGACTAGGCCTGTGGGAGAGAGAGGGCAGTGGCCTGCCCAAGAGGC
AACTCATATGAGCCCTCTAGTGGTCATGGTCCTCTCAGTGCCTCTCCTTTGCCCTCTGAC
CTCCCTGAGCCCCACTGGTCAATAGCTCTCTGAAACCAGAACAGAGATGGATTAATGAGC
AAGGGACTTGGCCCGCCTGCTCTCGGTAGGGGTCAGAGAATTCAAAGCCTGCTCTCAGCT
CTGCCTCCCCTGGCCAGGTTTCCCTAGACCTGCCCTGTGCCATGGCAGCTCACCTGCTTC
CCATCTGCACCCTCTTCCTGAACTTGCTCAGCGTGGCCCAAGGATCCAGGGACCCCGTGG
TACCCAACCGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               175-366, - strand, RNAz p=0.999128
               

               
               524-718, - strand, RNAz p=0.973897

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-366, - strand, RNAz p=0.999128
               

               
               524-718, - strand, RNAz p=0.973897

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               58-729, gnl|bosTau2|chr22 (38568433-38567775)
               

               
               58-729, gnl|Hg17|chr3 (50315972-50315304)
               

               
               58-729, gnl|Mm7|chr9 (107306455-107307112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-729, gnl|bosTau2|chr22 (38568433-38567775)
               

               
               58-729, gnl|Hg17|chr3 (50315972-50315304)
               

               
               58-729, gnl|Mm7|chr9 (107306455-107307112)

	175-366, - strand, RNAz p=0.999128
	524-718, - strand, RNAz p=0.973897

	58-729, gnl\|bosTau2\|chr22 (38568433-38567775)
	58-729, gnl\|Hg17\|chr3 (50315972-50315304)
	58-729, gnl\|Mm7\|chr9 (107306455-107307112)