Liv1-LVR010046G04
|
CTCTCCAACAGGGCGCGTACATGTTTACATCGTTTTGAGAGATAATGTCACACACGGCGA
CCTCCACCCTCCCAGGTCCTTATCAGCGGCCCCAAGACCTGCCTGGGCATCACTCGGTGT
CGCGAGCTCGGGACCGTGGAGGAGCTGCTGCGCCGCGGTGCGGACCCCAACCTGGTCCTC
GAGGATGGCGCGGCCGCCATGCACCTGGCGGCCAGAGCACAGCACCCGCGGGGTCTGTGT
TGCCTCGAGGCCCTGCTACGCCGAGGCGGGGACCCCAATGCTCGATCAGCCGAGGCGCTA
ACGCCGCTGCACGTGGCCGCTGCCTGGGGCCGTCGCCGTGGTCTGGAGCTGCTGCTGAGC
CAGGGAGCGGACCCCACACTGCGGGACCTGGACGGACTCCGGCCTGTGGACCTGGCCAAG
CAGCAGGGGCATCAGAACTGTGTGCGCCTCCTGCGGGAGCTGGAGACCCAGATCAGGACC
CCGACCAGGACACAGGCAGACACCCAGGGGCCAGAACCTGAGCCTGGAGGCCCAGGACCT
TGGGGAAAGGGACTGGATGCCAGCACCTTTGGACCTCCCAATGTGACACTGGACTCCACA
GCACTGGGCAGAGGTGGTGGCAAGGACATGAGCCTGCAGGCTGGCCCTCGACCCAGCAGC
CTCCTTGACCACCCTGACACAGATCGCAGTTTGGAGTCCCCCCTAGGGCACCGGGACTGC
AGCTCAGTTGCCTCCTTCATCACCGCAGTTGAGGCCTCTGAAGCTGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTCTCCAACAGGGCGCGTACATGTTTACATCGTTTTGAGAGATAATGTCACACACGGCGA
CCTCCACCCTCCCAGGTCCTTATCAGCGGCCCCAAGACCTGCCTGGGCATCACTCGGTGT
CGCGAGCTCGGGACCGTGGAGGAGCTGCTGCGCCGCGGTGCGGACCCCAACCTGGTCCTC
GAGGATGGCGCGGCCGCCATGCACCTGGCGGCCAGAGCACAGCACCCGCGGGGTCTGTGT
TGCCTCGAGGCCCTGCTACGCCGAGGCGGGGACCCCAATGCTCGATCAGCCGAGGCGCTA
ACGCCGCTGCACGTGGCCGCTGCCTGGGGCCGTCGCCGTGGTCTGGAGCTGCTGCTGAGC
CAGGGAGCGGACCCCACACTGCGGGACCTGGACGGACTCCGGCCTGTGGACCTGGCCAAG
CAGCAGGGGCATCAGAACTGTGTGCGCCTCCTGCGGGAGCTGGAGACCCAGATCAGGACC
CCGACCAGGACACAGGCAGACACCCAGGGGCCAGAACCTGAGCCTGGAGGCCCAGGACCT
TGGGGAAAGGGACTGGATGCCAGCACCTTTGGACCTCCCAATGTGACACTGGACTCCACA
GCACTGGGCAGAGGTGGTGGCAAGGACATGAGCCTGCAGGCTGGCCCTCGACCCAGCAGC
CTCCTTGACCACCCTGACACAGATCGCAGTTTGGAGTCCCCCCTAGGGCACCGGGACTGC
AGCTCAGTTGCCTCCTTCATCACCGCAGTTGAGGCCTCTGAAGCTGAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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628-720, - strand, RNAmicro p=0.907332 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
628-720, - strand, RNAmicro p=0.907332 |
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136-289, gnl|bosTau2|chr7 (2806623-2806470) |
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136-289, gnl|canFam2|chr20 (48468844-48468678) |
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136-289, gnl|danRer3|chrNA (4560353-4560516) |
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136-289, gnl|fr1|chrUn (169267567-169267733) |
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136-289, gnl|hg17|chr19 (17253858-17254024) |
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136-289, gnl|Hg17|chr19 (17253870-17254023) |
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136-289, gnl|loxAfr1|scaffold_30283 (5290-5463) |
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136-289, gnl|mm7|chr8 (69873075-69873240) |
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136-289, gnl|Mm7|chr8 (69873086-69873239) |
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136-289, gnl|monDom2|scaffold_100 (4334619-4334783) |
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136-289, gnl|panTro1|chr20 (17950312-17950478) |
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136-289, gnl|rheMac2|chr19 (16837671-16837837) |
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136-289, gnl|rn3|chr16 (18565818-18565983) |
| |
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528-768, gnl|bosTau2|chr7 (2805474-2805225) |
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528-768, gnl|Hg17|chr19 (17255038-17255266) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
136-289, gnl|bosTau2|chr7 (2806623-2806470) |
|
136-289, gnl|canFam2|chr20 (48468844-48468678) |
|
136-289, gnl|danRer3|chrNA (4560353-4560516) |
|
136-289, gnl|fr1|chrUn (169267567-169267733) |
|
136-289, gnl|hg17|chr19 (17253858-17254024) |
|
136-289, gnl|Hg17|chr19 (17253870-17254023) |
|
136-289, gnl|loxAfr1|scaffold_30283 (5290-5463) |
|
136-289, gnl|mm7|chr8 (69873075-69873240) |
|
136-289, gnl|Mm7|chr8 (69873086-69873239) |
|
136-289, gnl|monDom2|scaffold_100 (4334619-4334783) |
|
136-289, gnl|panTro1|chr20 (17950312-17950478) |
|
136-289, gnl|rheMac2|chr19 (16837671-16837837) |
|
136-289, gnl|rn3|chr16 (18565818-18565983) |
| |
|
528-768, gnl|bosTau2|chr7 (2805474-2805225) |
|
528-768, gnl|Hg17|chr19 (17255038-17255266) |
