Non-Coding RNA Search

Liv1-LVR010063B12

Sequence:


               
               CTTGAACCACTTATTTGCTCCTGAGCTTTCCAGTAGCCAAAGAGAAAAGAGTCACAGCCA
ATTGCAAGAATCCCATTGTAAGGGAGCCAGGGGCACGCTGCTCCTTCCCAAAGCTCAGAG
GCTCAGGAACTCTGCTAGAAAACAGTATCTCCTTCCTGTAGAGGATGGGAAGTTAAGCAG
ATAACCCCATCCCCGTGGCTGCCTCCTGTGGCCACATGTGATGGAAGCTGAAAGTTGACA
GAGAGTTCCCCATCATCCCCCAGGGTCAGCACTGGCTCCCTGGGGCTGGGGTCACAGCCC
TGGCCTGGATCTTTTGAGGAACCCAGCTTCCTCTGAGGACAGTTTCTGGACCCCCTGGAG
GCCCAGCTGGACCACACACAGAGACCCAGTCCTGCAGGCTGCAGCAGTCAGCATATGGCC
CAAGAAGGGAAGTTGGACCAGCCCCCTCGGCCCAGACCTGCTGACCTGGGCAAACCGCAG
GCCAGATAGACTGTGCTCCGAGACCCAGTCTGAGCAGAGGCTAGATGTTTCCTGTTTCTG
GAGCCCACTATTAGTCAGGATTCCTCAAAACAGATGCGGGGAGAGAGGCGGAAACTTCTG
GAGAGCATAGAGACAGGGGCTGGAGGTCTGTGTTCTCAGTCCCCCCTGCAGGAGAAAGCC
CAGACCCCTCAGCCCGGCCCTCCTAACTGCCCTGCTCCCTCCCGGAGAGGTTCTCGGCCG
TGGTCAGATTGGTTCCCCCACGTCCCGCACCCGACAGGTCCCATCCCACGCCGGCCCTCC
TGCAGGTACTGCACCCCTGCGTCAAAACACCTTCCTTCCTGTCTGTCCGCTCCCAGACCT
CCCCTCCCCATGGATGCCCTCCAGACCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAACCACTTATTTGCTCCTGAGCTTTCCAGTAGCCAAAGAGAAAAGAGTCACAGCCA
ATTGCAAGAATCCCATTGTAAGGGAGCCAGGGGCACGCTGCTCCTTCCCAAAGCTCAGAG
GCTCAGGAACTCTGCTAGAAAACAGTATCTCCTTCCTGTAGAGGATGGGAAGTTAAGCAG
ATAACCCCATCCCCGTGGCTGCCTCCTGTGGCCACATGTGATGGAAGCTGAAAGTTGACA
GAGAGTTCCCCATCATCCCCCAGGGTCAGCACTGGCTCCCTGGGGCTGGGGTCACAGCCC
TGGCCTGGATCTTTTGAGGAACCCAGCTTCCTCTGAGGACAGTTTCTGGACCCCCTGGAG
GCCCAGCTGGACCACACACAGAGACCCAGTCCTGCAGGCTGCAGCAGTCAGCATATGGCC
CAAGAAGGGAAGTTGGACCAGCCCCCTCGGCCCAGACCTGCTGACCTGGGCAAACCGCAG
GCCAGATAGACTGTGCTCCGAGACCCAGTCTGAGCAGAGGCTAGATGTTTCCTGTTTCTG
GAGCCCACTATTAGTCAGGATTCCTCAAAACAGATGCGGGGAGAGAGGCGGAAACTTCTG
GAGAGCATAGAGACAGGGGCTGGAGGTCTGTGTTCTCAGTCCCCCCTGCAGGAGAAAGCC
CAGACCCCTCAGCCCGGCCCTCCTAACTGCCCTGCTCCCTCCCGGAGAGGTTCTCGGCCG
TGGTCAGATTGGTTCCCCCACGTCCCGCACCCGACAGGTCCCATCCCACGCCGGCCCTCC
TGCAGGTACTGCACCCCTGCGTCAAAACACCTTCCTTCCTGTCTGTCCGCTCCCAGACCT
CCCCTCCCCATGGATGCCCTCCAGACCCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               366-518, - strand, RNAz p=0.809502

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-518, - strand, RNAz p=0.809502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               366-714, gnl|bosTau2|chr15 (34853837-34854177)
               

               
               366-714, gnl|Hg17|chr11 (74570386-74570728)
               

               
               366-714, gnl|Mm7|chr7 (95705898-95705622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-714, gnl|bosTau2|chr15 (34853837-34854177)
               

               
               366-714, gnl|Hg17|chr11 (74570386-74570728)
               

               
               366-714, gnl|Mm7|chr7 (95705898-95705622)

	366-714, gnl\|bosTau2\|chr15 (34853837-34854177)
	366-714, gnl\|Hg17\|chr11 (74570386-74570728)
	366-714, gnl\|Mm7\|chr7 (95705898-95705622)