Non-Coding RNA Search

Liv1-LVR010081G01

Sequence:


               
               TTATTCACCAGCTAGGCAATTTATGAACTCACATTTCAGCTCTAATTCTACCTCATCAGG
AGGAGAATTATAGGGCTGGAAAAACTCCACCAATCCTCCTCCACTGGAAAGAACCACACC
CAAAGCCAGCCAGGGCAACAGGGATCCCTGGCACATTTTTTGGAGACTTCTAATTTAAGG
TATTCCACAGCCAATCTCCTTTGGGAGCAAAAAGTGGAGTTCCACCTCTCCATCCTGTTC
GCCCTGCTGTGGTTCCTCTTCCCATGCCCCGTGCAGCTGGCTAGAGTAAGGATGCCACCC
CCCTCCCAGGCTTCACCAGCTTCCCCTATCTTAGTATCTTCAGGGGCCTGCCTGCATTCC
TGTCCATGGGCTGTGACATGAGGCATGCTGGATCAGGCCAGAGCCCTGGGCCAAAAGGAA
GGGAGAGTAAACAGGGAGGGCTCTGCCCACCTAGGGTCTAGGGTCTGGGCTGGAAGAAAC
TAACTCGATGCCAGAGGCTGGCCCCCCAAGAGTGCTTCATCTGTTCAAGCCACAGTGCCC
AAAGGGAAAAGAAAGCTTGAGCAAAGAGTGGTACGACAGGGTCCTATCTGGATGGTGTGT
GGCCTGGAGAGATTCCAGGTAGCAGCAGTTGTGCAGGAATTAGGTCCAGCAGGGATGCAG
GTCTGGAAGAGCTGAATGTTCACGGAGGGTATCAGCAAACAGATGTGGCCACAGAGAGGA
ATATGTTTTCTTTCAGGAAAAGAAATTAGCAAGAAGACAGAGTATAGTATAGGGGCCTTG
AACGAGCAATCCACGGATCAAAATAAGACTCAAGTTCTAGGCTGAAGTGGGGGTCCCTTC
TCGTTTCCCATTACCCATGCAGCCCTCCTCACCCTACTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCACCAGCTAGGCAATTTATGAACTCACATTTCAGCTCTAATTCTACCTCATCAGG
AGGAGAATTATAGGGCTGGAAAAACTCCACCAATCCTCCTCCACTGGAAAGAACCACACC
CAAAGCCAGCCAGGGCAACAGGGATCCCTGGCACATTTTTTGGAGACTTCTAATTTAAGG
TATTCCACAGCCAATCTCCTTTGGGAGCAAAAAGTGGAGTTCCACCTCTCCATCCTGTTC
GCCCTGCTGTGGTTCCTCTTCCCATGCCCCGTGCAGCTGGCTAGAGTAAGGATGCCACCC
CCCTCCCAGGCTTCACCAGCTTCCCCTATCTTAGTATCTTCAGGGGCCTGCCTGCATTCC
TGTCCATGGGCTGTGACATGAGGCATGCTGGATCAGGCCAGAGCCCTGGGCCAAAAGGAA
GGGAGAGTAAACAGGGAGGGCTCTGCCCACCTAGGGTCTAGGGTCTGGGCTGGAAGAAAC
TAACTCGATGCCAGAGGCTGGCCCCCCAAGAGTGCTTCATCTGTTCAAGCCACAGTGCCC
AAAGGGAAAAGAAAGCTTGAGCAAAGAGTGGTACGACAGGGTCCTATCTGGATGGTGTGT
GGCCTGGAGAGATTCCAGGTAGCAGCAGTTGTGCAGGAATTAGGTCCAGCAGGGATGCAG
GTCTGGAAGAGCTGAATGTTCACGGAGGGTATCAGCAAACAGATGTGGCCACAGAGAGGA
ATATGTTTTCTTTCAGGAAAAGAAATTAGCAAGAAGACAGAGTATAGTATAGGGGCCTTG
AACGAGCAATCCACGGATCAAAATAAGACTCAAGTTCTAGGCTGAAGTGGGGGTCCCTTC
TCGTTTCCCATTACCCATGCAGCCCTCCTCACCCTACTCATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.891713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.891713

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-282, gnl|bosTau2|chr14 (5029901-5030182)
               

               
               1-282, gnl|Hg17|chr2 (44236708-44236987)
               

               
               1-282, gnl|Mm7|chr17 (83191808-83192090)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr14 (5029901-5030182)
               

               
               1-282, gnl|Hg17|chr2 (44236708-44236987)
               

               
               1-282, gnl|Mm7|chr17 (83191808-83192090)

	1-282, gnl\|bosTau2\|chr14 (5029901-5030182)
	1-282, gnl\|Hg17\|chr2 (44236708-44236987)
	1-282, gnl\|Mm7\|chr17 (83191808-83192090)