Non-Coding RNA Search

Liv1-LVR010101A04

Sequence:


               
               ACATCCAAGGGGCTGAGGGGGACAGGGGGCAGTCCTTGCAGGGCAGTGGTGTCCTGGTCC
CAGCCCAGACGCTAGGGCCCAGGTGTTGGTTGTTCTGGTTCTCCTGTCCTTTGGCACCAA
TTAGCCCTTACCTTCTGGTTCTGAAGCTGGACTTCTTGTCCTTAGTTTCCTGGAATGGTC
CCTAAAATTTTGTGTCTGTGTGTTTTTTCTGGGAGAAGGATGCTGAGCTTCCCCCATCCC
CTAAATGTCCTTGAACCCAAGCATATTAAAAGCCACTAGTGTCTCTTAGCCATGGTAGTC
TTGGGAGTACATGACAAGACCCAGCATCCACAGGAAGAAGGAACGTAACAGTTTCATAAG
TGCCACCACAGTAAAGGCTAGGCGGTGAGACCATGAGGCCTGGTGACTTCTGAGAATCTA
GAGAGCACAGGAGATCCAGGGTCAAGAGGAAGGGGACGACCCTCAGGTAAAGGCCACAGC
GGACTGGGAAGAACTCCCAGAACGGGGCGGCCACAGAAGATTTCCAAGGGGAAGACCTGG
CAGGGAACTTCTCACTTAGTTGGCAGGGGTATGGAATAGTGGAGGTGGAGCCCAGTAGAT
CTGGCTTTTATCCCCACTCAGCTACTTAGAAGCTGTGCAACCTGGGGCAAATACCCTAAC
CCCTCTGAGCTCCCCAAATGATGGTGATGACAGAACGTGTAGGAGCCCAGCCATAACTGC
AGTGGGTACGGTAGCCATTCTGACATGGGCACCAAGCTATGAGGCCCCACAGCCAGGCTC
CTCTCAGGTTGCCTCTCCCAGGCAAAGCCTGTATTTGTCAAAGTAGCCCTCCAGGGGGAT
CACGGAGAGGGCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCCAAGGGGCTGAGGGGGACAGGGGGCAGTCCTTGCAGGGCAGTGGTGTCCTGGTCC
CAGCCCAGACGCTAGGGCCCAGGTGTTGGTTGTTCTGGTTCTCCTGTCCTTTGGCACCAA
TTAGCCCTTACCTTCTGGTTCTGAAGCTGGACTTCTTGTCCTTAGTTTCCTGGAATGGTC
CCTAAAATTTTGTGTCTGTGTGTTTTTTCTGGGAGAAGGATGCTGAGCTTCCCCCATCCC
CTAAATGTCCTTGAACCCAAGCATATTAAAAGCCACTAGTGTCTCTTAGCCATGGTAGTC
TTGGGAGTACATGACAAGACCCAGCATCCACAGGAAGAAGGAACGTAACAGTTTCATAAG
TGCCACCACAGTAAAGGCTAGGCGGTGAGACCATGAGGCCTGGTGACTTCTGAGAATCTA
GAGAGCACAGGAGATCCAGGGTCAAGAGGAAGGGGACGACCCTCAGGTAAAGGCCACAGC
GGACTGGGAAGAACTCCCAGAACGGGGCGGCCACAGAAGATTTCCAAGGGGAAGACCTGG
CAGGGAACTTCTCACTTAGTTGGCAGGGGTATGGAATAGTGGAGGTGGAGCCCAGTAGAT
CTGGCTTTTATCCCCACTCAGCTACTTAGAAGCTGTGCAACCTGGGGCAAATACCCTAAC
CCCTCTGAGCTCCCCAAATGATGGTGATGACAGAACGTGTAGGAGCCCAGCCATAACTGC
AGTGGGTACGGTAGCCATTCTGACATGGGCACCAAGCTATGAGGCCCCACAGCCAGGCTC
CTCTCAGGTTGCCTCTCCCAGGCAAAGCCTGTATTTGTCAAAGTAGCCCTCCAGGGGGAT
CACGGAGAGGGCGGT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               3-113, - strand, RNAz p=0.56629
               

               
               311-429, - strand, RNAz p=0.772498
               

               
               470-571, - strand, RNAz p=0.940379
               

               
               738-855, - strand, RNAz p=0.534149

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-113, - strand, RNAz p=0.56629
               

               
               311-429, - strand, RNAz p=0.772498
               

               
               470-571, - strand, RNAz p=0.940379
               

               
               738-855, - strand, RNAz p=0.534149

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-855, gnl|bosTau2|chr28 (19783481-19782625)
               

               
               3-855, gnl|Hg17|chr10 (71232928-71233744)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-855, gnl|bosTau2|chr28 (19783481-19782625)
               

               
               3-855, gnl|Hg17|chr10 (71232928-71233744)

	3-113, - strand, RNAz p=0.56629
	311-429, - strand, RNAz p=0.772498
	470-571, - strand, RNAz p=0.940379
	738-855, - strand, RNAz p=0.534149

	3-855, gnl\|bosTau2\|chr28 (19783481-19782625)
	3-855, gnl\|Hg17\|chr10 (71232928-71233744)