Non-Coding RNA Search

Liv1-LVR01A090088

Sequence:


               
               GTGCGGTGCTCAGCAGGGCACCTCCGGTTGTCATTTCCCTCCTCGGTGTTTCTAGCTGAG
AAATAAGACAGTAAAATTGAGAAAACCAGCTGGGCGTTTTCCCGGCAGCATCGTTGGCTC
GGTGTGTATGGCCGCCGTCTGTCTTCCAGACACCAGAAGGCGGAGTTTTACGCCCGGTCT
TCTGTCTGTGCTCTTAATGCTGCTCTAGAAGGGTCGTCGTGGCCGGTCTGTAGGGAGAGG
ATCAATAATGCAGTGTTCTGTTTCTGTTTTTGTTCTGTGCGTGTGCGTGCACGCCTGCGT
GTGTGTGCGTGTGCGTGCGTGTGCAGTTCAGCCAGCCTCCTCGGCTAACGCCCCGTGGAA
GACAGACTCTGTGAGTGTGGGCGGAGGAAGCCGGCAGCGATCTTCGTCAGATCCGCCAGC
TGTCCATCCGCCGCTGCCCCCTCTCCGAGTGACGTCGACCAGTACGTTTCCTTCCTTTTC
CTTTCTTGCCGTGGGCTTCGCGGATCTGGATGGCGGGGGGTCTCGGCAGCCGCCGAGGTG
CCCGGCGCCCCTCCTCGCCAGCTGCGGGCTCCTGTCTGCCTCGCCCCACGGGCCTCTCAC
GCGCTTCCTCGGCCCCCGACCCTTCGGCCGCCCTTCCTTCTTTCCCGCGTGGGCTGGGGC
TTCACGTCCTTTGGCCATTTGGTGGTTCTCAATATCTGGGCACGTTCCTGTGGCTTTTAC
TCTGGTCTGTGTGTCCCTTCAGTGTCGCAGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGGTGCTCAGCAGGGCACCTCCGGTTGTCATTTCCCTCCTCGGTGTTTCTAGCTGAG
AAATAAGACAGTAAAATTGAGAAAACCAGCTGGGCGTTTTCCCGGCAGCATCGTTGGCTC
GGTGTGTATGGCCGCCGTCTGTCTTCCAGACACCAGAAGGCGGAGTTTTACGCCCGGTCT
TCTGTCTGTGCTCTTAATGCTGCTCTAGAAGGGTCGTCGTGGCCGGTCTGTAGGGAGAGG
ATCAATAATGCAGTGTTCTGTTTCTGTTTTTGTTCTGTGCGTGTGCGTGCACGCCTGCGT
GTGTGTGCGTGTGCGTGCGTGTGCAGTTCAGCCAGCCTCCTCGGCTAACGCCCCGTGGAA
GACAGACTCTGTGAGTGTGGGCGGAGGAAGCCGGCAGCGATCTTCGTCAGATCCGCCAGC
TGTCCATCCGCCGCTGCCCCCTCTCCGAGTGACGTCGACCAGTACGTTTCCTTCCTTTTC
CTTTCTTGCCGTGGGCTTCGCGGATCTGGATGGCGGGGGGTCTCGGCAGCCGCCGAGGTG
CCCGGCGCCCCTCCTCGCCAGCTGCGGGCTCCTGTCTGCCTCGCCCCACGGGCCTCTCAC
GCGCTTCCTCGGCCCCCGACCCTTCGGCCGCCCTTCCTTCTTTCCCGCGTGGGCTGGGGC
TTCACGTCCTTTGGCCATTTGGTGGTTCTCAATATCTGGGCACGTTCCTGTGGCTTTTAC
TCTGGTCTGTGTGTCCCTTCAGTGTCGCAGGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               375-490, - strand, RNAz p=0.641023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-490, - strand, RNAz p=0.641023

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-520, gnl|bosTau2|chr11 (69770422-69770927)
               

               
               3-520, gnl|Hg17|chr2 (9481459-9481978)
               

               
               3-520, gnl|Mm7|chr12 (19615594-19616067)
               


               
               543-753, gnl|bosTau2|chr11 (69771017-69771227)
               

               
               543-753, gnl|Hg17|chr2 (9482053-9482294)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-520, gnl|bosTau2|chr11 (69770422-69770927)
               

               
               3-520, gnl|Hg17|chr2 (9481459-9481978)
               

               
               3-520, gnl|Mm7|chr12 (19615594-19616067)
               


               
               543-753, gnl|bosTau2|chr11 (69771017-69771227)
               

               
               543-753, gnl|Hg17|chr2 (9482053-9482294)

	3-520, gnl\|bosTau2\|chr11 (69770422-69770927)
	3-520, gnl\|Hg17\|chr2 (9481459-9481978)
	3-520, gnl\|Mm7\|chr12 (19615594-19616067)

	543-753, gnl\|bosTau2\|chr11 (69771017-69771227)
	543-753, gnl\|Hg17\|chr2 (9482053-9482294)