Non-Coding RNA Search

Liv1-LVR01A120088

Sequence:


               
               AGGGCCAGGGTTGTGTTCGGAGCCTTGGCGGGGCTGGGGTTCCGATGTGGTCCCCGGAGC
GGGAGGCCGAGGCCCCGGCCGGGGGAGACTCGGCGGGCCTACTGCCCCCCGAGTGGGAGG
AAGATGAGGAGCGCATGTCTTTCCTGTTCTCCGCCTTCAAAAGGAGTCGCGAGGTGAACA
GCACCGACTGGGACAGCAAGATGGGCTTCTGGGCACCGTTGGTGCTGAGCCACAGCCGCC
GCCAGGGGGTGGTGCGCCTGCGTCTGCGGGACTTGCAGGAGGCCTTTCAGCGCAAGGGCA
GCGTCCCGCTGGGGCTGGCCACCGTGCTGCAGGACCTGCTGCGTCGAGGGGAGCTGCAGC
GGGAGTCAGACTTCATGGCCAGCGTAGATAGCAGCTGGATCTCCTGGGGGGTTGGAGTCT
TCCTGCTGAAGCCCCTCAAGTGGACTCTTTCCAACATGCTGGGGGATAATAAGGTTCCTG
CTGAGGAGGTGCTAGTGGCTGTGGAGCTGCTTAAGGAGAAGGCAGAGGAGGTGTATCGTC
TGTATCAGAACTCCCCTCTCTCCTCCCACCCTGTGGTGGCCCTGTCGGAGCTGAGTGCCC
TCTGCGCCGGCTCCTGTCCAGATGAGAGGACCTTCTACTTGGTGTTGCTGCAGCTGCAGA
AAGAGAAGAGAGTCACTGTCTTGGAGCAGAACGGGGAGGAGATTGTGAAGTTTGCCCGGG
GGCCACACGCCAAGGTCTCTCCTGTCAACGACGTAGATGTCGGGGTTTATCAGCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCCAGGGTTGTGTTCGGAGCCTTGGCGGGGCTGGGGTTCCGATGTGGTCCCCGGAGC
GGGAGGCCGAGGCCCCGGCCGGGGGAGACTCGGCGGGCCTACTGCCCCCCGAGTGGGAGG
AAGATGAGGAGCGCATGTCTTTCCTGTTCTCCGCCTTCAAAAGGAGTCGCGAGGTGAACA
GCACCGACTGGGACAGCAAGATGGGCTTCTGGGCACCGTTGGTGCTGAGCCACAGCCGCC
GCCAGGGGGTGGTGCGCCTGCGTCTGCGGGACTTGCAGGAGGCCTTTCAGCGCAAGGGCA
GCGTCCCGCTGGGGCTGGCCACCGTGCTGCAGGACCTGCTGCGTCGAGGGGAGCTGCAGC
GGGAGTCAGACTTCATGGCCAGCGTAGATAGCAGCTGGATCTCCTGGGGGGTTGGAGTCT
TCCTGCTGAAGCCCCTCAAGTGGACTCTTTCCAACATGCTGGGGGATAATAAGGTTCCTG
CTGAGGAGGTGCTAGTGGCTGTGGAGCTGCTTAAGGAGAAGGCAGAGGAGGTGTATCGTC
TGTATCAGAACTCCCCTCTCTCCTCCCACCCTGTGGTGGCCCTGTCGGAGCTGAGTGCCC
TCTGCGCCGGCTCCTGTCCAGATGAGAGGACCTTCTACTTGGTGTTGCTGCAGCTGCAGA
AAGAGAAGAGAGTCACTGTCTTGGAGCAGAACGGGGAGGAGATTGTGAAGTTTGCCCGGG
GGCCACACGCCAAGGTCTCTCCTGTCAACGACGTAGATGTCGGGGTTTATCAGCTAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61870062|ref|XP_597849.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870062|ref|XP_597849.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               553-672, - strand, RNAz p=0.976021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-672, - strand, RNAz p=0.976021

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-350, gnl|bosTau2|chr8 (37052981-37052632)
               

               
               1-350, gnl|Hg17|chr8 (23160110-23160460)
               

               
               1-350, gnl|Mm7|chr14 (64377017-64376668)
               


               
               514-701, gnl|bosTau2|chr8 (37045063-37044876)
               

               
               514-701, gnl|Hg17|chr8 (23168703-23168890)
               

               
               514-701, gnl|Mm7|chr14 (64365878-64365691)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-350, gnl|bosTau2|chr8 (37052981-37052632)
               

               
               1-350, gnl|Hg17|chr8 (23160110-23160460)
               

               
               1-350, gnl|Mm7|chr14 (64377017-64376668)
               


               
               514-701, gnl|bosTau2|chr8 (37045063-37044876)
               

               
               514-701, gnl|Hg17|chr8 (23168703-23168890)
               

               
               514-701, gnl|Mm7|chr14 (64365878-64365691)

	1-350, gnl\|bosTau2\|chr8 (37052981-37052632)
	1-350, gnl\|Hg17\|chr8 (23160110-23160460)
	1-350, gnl\|Mm7\|chr14 (64377017-64376668)

	514-701, gnl\|bosTau2\|chr8 (37045063-37044876)
	514-701, gnl\|Hg17\|chr8 (23168703-23168890)
	514-701, gnl\|Mm7\|chr14 (64365878-64365691)