Non-Coding RNA Search

Liv1-LVR01C070083

Sequence:


               
               TACTAaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgc
aaattcgtgaagcgttccatatttttCTGACGGGGGGCCTTGTTTCCTGGCTGAGAAAGG
TACCAGTTTCAGAGCTTGAAACACTGTTTGACCGGAGGAGAGGCCCTAAACCCTGACGTG
AGGGGGAAGTGGAAGAGCCAGACAGGCCTGGAGCTGCACGAAGGCTACGGCCAGTCGGAA
ACAGTTGTAATCTGTGCCAATCCCAAAGGCTCGAAAATCAAGGCAGGATCCATGGGGCAA
GCGTCCCCACCTTATGAGGTGCAGATCGTAGATGATGAGGGCAATGTCCTGCCTCCGGGA
GAAGAGGGGAATATTGCTATCCGCGTCAGACCTGCCCGGCCCTTCTGTTTCTTCCGTTGC
TACTTGGACAATCCTGAGAAGACAGCGGCATCGGAACGGGGGGACTTTTACATCACAGGG
GACCGAGCCCACATGGACAAGGATGGCTACTTTTGGTTCATGGGAAGAAATGACGATGTG
ATCAATTCCTCAAGGTCAAGTTGTCTGCTCTTCCCTTCTCCCTTTGAAGCTTCATGGGGG
GAGGGGAGGTCACTTGGGAGAGTTGCTTTTTCTCTTCCAGCTACCGGATCGGGCCCGTGG
AAGTGGAGAGTGCCCTTGCTGAGCACCCCGCCGTCCTGGAGGCAGCCGTGGTCAGCAGCC
CGGACCCCCTCCGAGGGGAGGTGGTGAAGGCATTCATAGTCCTTTCTCCAGCCTACACCT
CGCACGATCCNAAGAAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTAaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgc
aaattcgtgaagcgttccatatttttCTGACGGGGGGCCTTGTTTCCTGGCTGAGAAAGG
TACCAGTTTCAGAGCTTGAAACACTGTTTGACCGGAGGAGAGGCCCTAAACCCTGACGTG
AGGGGGAAGTGGAAGAGCCAGACAGGCCTGGAGCTGCACGAAGGCTACGGCCAGTCGGAA
ACAGTTGTAATCTGTGCCAATCCCAAAGGCTCGAAAATCAAGGCAGGATCCATGGGGCAA
GCGTCCCCACCTTATGAGGTGCAGATCGTAGATGATGAGGGCAATGTCCTGCCTCCGGGA
GAAGAGGGGAATATTGCTATCCGCGTCAGACCTGCCCGGCCCTTCTGTTTCTTCCGTTGC
TACTTGGACAATCCTGAGAAGACAGCGGCATCGGAACGGGGGGACTTTTACATCACAGGG
GACCGAGCCCACATGGACAAGGATGGCTACTTTTGGTTCATGGGAAGAAATGACGATGTG
ATCAATTCCTCAAGGTCAAGTTGTCTGCTCTTCCCTTCTCCCTTTGAAGCTTCATGGGGG
GAGGGGAGGTCACTTGGGAGAGTTGCTTTTTCTCTTCCAGCTACCGGATCGGGCCCGTGG
AAGTGGAGAGTGCCCTTGCTGAGCACCCCGCCGTCCTGGAGGCAGCCGTGGTCAGCAGCC
CGGACCCCCTCCGAGGGGAGGTGGTGAAGGCATTCATAGTCCTTTCTCCAGCCTACACCT
CGCACGATCCNAAGAAACTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O75202_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O75202_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               96-213, + strand, RNAz p=0.646082
               

               
               623-742, + strand, RNAz p=0.651734

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-213, + strand, RNAz p=0.646082
               

               
               623-742, + strand, RNAz p=0.651734

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               96-245, gnl|bosTau2|chr25 (15943577-15943726)
               

               
               96-245, gnl|Hg17|chr16 (20348476-20348626)
               

               
               96-245, gnl|Mm7|chr7 (115459457-115459607)
               


               
               426-742, gnl|bosTau2|chr25 (15948786-15949101)
               

               
               426-742, gnl|Hg17|chr16 (20355874-20356192)
               

               
               426-742, gnl|Mm7|chr7 (115462880-115463188)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-245, gnl|bosTau2|chr25 (15943577-15943726)
               

               
               96-245, gnl|Hg17|chr16 (20348476-20348626)
               

               
               96-245, gnl|Mm7|chr7 (115459457-115459607)
               


               
               426-742, gnl|bosTau2|chr25 (15948786-15949101)
               

               
               426-742, gnl|Hg17|chr16 (20355874-20356192)
               

               
               426-742, gnl|Mm7|chr7 (115462880-115463188)

	96-213, + strand, RNAz p=0.646082
	623-742, + strand, RNAz p=0.651734

	96-245, gnl\|bosTau2\|chr25 (15943577-15943726)
	96-245, gnl\|Hg17\|chr16 (20348476-20348626)
	96-245, gnl\|Mm7\|chr7 (115459457-115459607)

	426-742, gnl\|bosTau2\|chr25 (15948786-15949101)
	426-742, gnl\|Hg17\|chr16 (20355874-20356192)
	426-742, gnl\|Mm7\|chr7 (115462880-115463188)