Non-Coding RNA Search

Liv1-LVRM10001E10

Sequence:


               
               AGTGCGCGAGGCGGCCCGGGCTGTGTGCACTAGCGGAGACAAAGCGCTGGCTGAGGTGGC
AGAGACGCCAGCGATAGCAGCGGCGGAGGAGACCTAGACGCCGAATTTTGTGGTGTTGAG
TCCGGTCACCATATCATCCAGCGCAGTGCGGGCTGTGGTCTCGCGGCGGCGGTGGCGGCA
GCGGCGGAGGCGGAGGCAGCACATGGTTCCAAGAGCGCGCTGCGGTTGTTGGGTTCCAAT
TCCGTGGGGAGGGACAAAGGCAGCTGCAGCTGTGAGCGCAGGGCAACGCCCGCTCGGGTA
GTGTACTCGTCACTGCCCTCAATCCGGGCCTTGAAAGCTGGGACTATCTTCTCTATGTGA
GGAGGAGAACACGGGACCGAGCGCCTGAGAGGCTGAGGCCGCTGTCTGAGGGAAGTGGGG
GAGGGGCGCAACTCGCCTGAGTTGATTTGGGCGGGTCAGGTCTGAGGCGACTTAATGGGT
CTGTGTGAGGTAATTTGACCCACTACCCTGAGGAAAGTGGGACGGACCTCATGCTAGGTT
TGGTCCAGGCTTTGAAAAACAGAAATCGGTCTTCAGCGCTTTGGAAATCTTTCATTTGGG
AGGTGGTGAAGTCGGATCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCGCGAGGCGGCCCGGGCTGTGTGCACTAGCGGAGACAAAGCGCTGGCTGAGGTGGC
AGAGACGCCAGCGATAGCAGCGGCGGAGGAGACCTAGACGCCGAATTTTGTGGTGTTGAG
TCCGGTCACCATATCATCCAGCGCAGTGCGGGCTGTGGTCTCGCGGCGGCGGTGGCGGCA
GCGGCGGAGGCGGAGGCAGCACATGGTTCCAAGAGCGCGCTGCGGTTGTTGGGTTCCAAT
TCCGTGGGGAGGGACAAAGGCAGCTGCAGCTGTGAGCGCAGGGCAACGCCCGCTCGGGTA
GTGTACTCGTCACTGCCCTCAATCCGGGCCTTGAAAGCTGGGACTATCTTCTCTATGTGA
GGAGGAGAACACGGGACCGAGCGCCTGAGAGGCTGAGGCCGCTGTCTGAGGGAAGTGGGG
GAGGGGCGCAACTCGCCTGAGTTGATTTGGGCGGGTCAGGTCTGAGGCGACTTAATGGGT
CTGTGTGAGGTAATTTGACCCACTACCCTGAGGAAAGTGGGACGGACCTCATGCTAGGTT
TGGTCCAGGCTTTGAAAAACAGAAATCGGTCTTCAGCGCTTTGGAAATCTTTCATTTGGG
AGGTGGTGAAGTCGGATCTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               375-483, - strand, RNAz p=0.971909

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-483, - strand, RNAz p=0.971909

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-621, gnl|bosTau2|chr17 (43058614-43058012)
               

               
               1-621, gnl|canFam2|chr26 (27022574-27023631)
               

               
               1-621, gnl|dasNov1|scaffold_22284 (6899-5861)
               

               
               1-621, gnl|echTel1|scaffold_61475 (1357-314)
               

               
               1-621, gnl|hg17|chr22 (29688581-29689614)
               

               
               1-621, gnl|Hg17|chr22 (29689574-29688978)
               

               
               1-621, gnl|loxAfr1|scaffold_5599 (30856-31947)
               

               
               1-621, gnl|mm7|chr11 (3602235-3601217)
               

               
               1-621, gnl|Mm7|chr11 (3601253-3601888)
               

               
               1-621, gnl|oryCun1|scaffold_198262 (39661-40745)
               

               
               1-621, gnl|panTro1|chr23 (29778038-29779059)
               

               
               1-621, gnl|rheMac2|chr10 (74843997-74845038)
               

               
               1-621, gnl|rn3|chr14 (84314191-84313170)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr17 (43058614-43058012)
               

               
               1-621, gnl|canFam2|chr26 (27022574-27023631)
               

               
               1-621, gnl|dasNov1|scaffold_22284 (6899-5861)
               

               
               1-621, gnl|echTel1|scaffold_61475 (1357-314)
               

               
               1-621, gnl|hg17|chr22 (29688581-29689614)
               

               
               1-621, gnl|Hg17|chr22 (29689574-29688978)
               

               
               1-621, gnl|loxAfr1|scaffold_5599 (30856-31947)
               

               
               1-621, gnl|mm7|chr11 (3602235-3601217)
               

               
               1-621, gnl|Mm7|chr11 (3601253-3601888)
               

               
               1-621, gnl|oryCun1|scaffold_198262 (39661-40745)
               

               
               1-621, gnl|panTro1|chr23 (29778038-29779059)
               

               
               1-621, gnl|rheMac2|chr10 (74843997-74845038)
               

               
               1-621, gnl|rn3|chr14 (84314191-84313170)

	1-621, gnl\|bosTau2\|chr17 (43058614-43058012)
	1-621, gnl\|canFam2\|chr26 (27022574-27023631)
	1-621, gnl\|dasNov1\|scaffold_22284 (6899-5861)
	1-621, gnl\|echTel1\|scaffold_61475 (1357-314)
	1-621, gnl\|hg17\|chr22 (29688581-29689614)
	1-621, gnl\|Hg17\|chr22 (29689574-29688978)
	1-621, gnl\|loxAfr1\|scaffold_5599 (30856-31947)
	1-621, gnl\|mm7\|chr11 (3602235-3601217)
	1-621, gnl\|Mm7\|chr11 (3601253-3601888)
	1-621, gnl\|oryCun1\|scaffold_198262 (39661-40745)
	1-621, gnl\|panTro1\|chr23 (29778038-29779059)
	1-621, gnl\|rheMac2\|chr10 (74843997-74845038)
	1-621, gnl\|rn3\|chr14 (84314191-84313170)