Non-Coding RNA Search

Liv1-LVRM10017E10

Sequence:


               
               ATTTGTTAACATTTTTATGATGCCAAATGGTCTGTAGGAGAACGGGCGCCATTCTTTAGC
TGGGAAACCATATGGCACGACGAGTAATAAATAAGGTATTGTGATAGTTAATGAACCTAA
TTGCCAGCAAAGGCTTTAATACAGAGACTGTGCTGCTGAGAATTTAGCACCACATTAGGG
ATGCCGCGGAGCTCCCCTGACTTCTGAGGCTTAATTTAAGTTCTATATTGCAAACTCCAG
AAAATAATTCCTAACCCTCCTGCTGGAAAAGCAACCTGCTGGTAGACTGTGATTATACCG
AATTACTAAAATCGCAATCAATTTTCTACACACGGTTAACCCTTGCCAGGAAGGAACTCA
CGGGGAGGAGAGGGATCAGGACGGCAGCCCGTTCTACCTGTGGCTCCGTATTGAGGACAG
CGAGAGGCAGGAAAGGAGTGGTGCCTGAAGAAAGGGACCAGAGCCAGGTAACTGTCCTAC
AAAGAGAGGAAGTGGGAGAGATGCTGATAGGAGACCTGGGCCCAGGCACAGCCTGTTGCT
TCCTCTTGTCCTGCAAGGCCCCCTCCCCGGTGGGACAAAAAGACAAGGGGTCACGGAAAG
AGGGGTCTGTGCTCGCCGCTCACACCCAGCAGCGGGAATCCTGGGNCAGAAAGGAACGGA
GCCATCGCTGCTCTTATTCCATAAGTCAAGGTTATTAACTANAGAAGATCAAATCGTGGC
AGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGTTAACATTTTTATGATGCCAAATGGTCTGTAGGAGAACGGGCGCCATTCTTTAGC
TGGGAAACCATATGGCACGACGAGTAATAAATAAGGTATTGTGATAGTTAATGAACCTAA
TTGCCAGCAAAGGCTTTAATACAGAGACTGTGCTGCTGAGAATTTAGCACCACATTAGGG
ATGCCGCGGAGCTCCCCTGACTTCTGAGGCTTAATTTAAGTTCTATATTGCAAACTCCAG
AAAATAATTCCTAACCCTCCTGCTGGAAAAGCAACCTGCTGGTAGACTGTGATTATACCG
AATTACTAAAATCGCAATCAATTTTCTACACACGGTTAACCCTTGCCAGGAAGGAACTCA
CGGGGAGGAGAGGGATCAGGACGGCAGCCCGTTCTACCTGTGGCTCCGTATTGAGGACAG
CGAGAGGCAGGAAAGGAGTGGTGCCTGAAGAAAGGGACCAGAGCCAGGTAACTGTCCTAC
AAAGAGAGGAAGTGGGAGAGATGCTGATAGGAGACCTGGGCCCAGGCACAGCCTGTTGCT
TCCTCTTGTCCTGCAAGGCCCCCTCCCCGGTGGGACAAAAAGACAAGGGGTCACGGAAAG
AGGGGTCTGTGCTCGCCGCTCACACCCAGCAGCGGGAATCCTGGGNCAGAAAGGAACGGA
GCCATCGCTGCTCTTATTCCATAAGTCAAGGTTATTAACTANAGAAGATCAAATCGTGGC
AGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.926439
               

               
               240-359, - strand, RNAz p=0.514009

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.926439
               

               
               240-359, - strand, RNAz p=0.514009

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-723, gnl|bosTau2|chr15 (11127040-11127756)
               

               
               1-723, gnl|Hg17|chr11 (113407532-113406824)
               

               
               1-723, gnl|Mm7|chr9 (48838642-48839320)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-723, gnl|bosTau2|chr15 (11127040-11127756)
               

               
               1-723, gnl|Hg17|chr11 (113407532-113406824)
               

               
               1-723, gnl|Mm7|chr9 (48838642-48839320)

	1-119, - strand, RNAz p=0.926439
	240-359, - strand, RNAz p=0.514009

	1-723, gnl\|bosTau2\|chr15 (11127040-11127756)
	1-723, gnl\|Hg17\|chr11 (113407532-113406824)
	1-723, gnl\|Mm7\|chr9 (48838642-48839320)