Non-Coding RNA Search

Liv1-LVRM10027D10

Sequence:


               
               CAGGAGCCACCACTGTTGCGTCTGTGACAGAAGTCACCCTCTCACTGCTCACCCAGCTCC
AAAAACAGGACGCTCATGGCCTGCCAGTCCATGTCTGAACAGCTCACGTCATCAGGCAGC
ACATTTCAATCTCTGGTTCCAACCTGCTTCCCCGTGGCTTGTATCCATTGCTCCAGTTCT
GCCCCGTGCAGCACACCGAATAAGTCTAGTCTCTTCTTCTGTGGCATCCGAGGGCCCAGA
GCCTTTTCTCCTCCAGGGGAAACACCTTCAGTTCTTTTCACTGCTCCCACAGGTCACAGC
CTCCCCCATGCAGCCCCCGCTGTCATCACGGTCCCTATGAAAATGAGGGCACACAGGTTT
CTGGGTTGGGATGGCGTGAGCATCCCCGGCTCCCTCGGGCGAGGCGCCCTTCTCCAGCCC
GGCTGGGCTAACGCGCCTGTCTCTGCAGGGGGATTGATCATGGGCACAGGCATCGAGTCT
TCATCCCACAAGTACGGCCTGTTCCAGCACATCTGTACGGCCTACGAGCTGGTGCTGGCT
GATGGCAGCTTCGTGCGATGCACACCGGTGAGTTCAGAGCCCGGGGCTGTCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGCCACCACTGTTGCGTCTGTGACAGAAGTCACCCTCTCACTGCTCACCCAGCTCC
AAAAACAGGACGCTCATGGCCTGCCAGTCCATGTCTGAACAGCTCACGTCATCAGGCAGC
ACATTTCAATCTCTGGTTCCAACCTGCTTCCCCGTGGCTTGTATCCATTGCTCCAGTTCT
GCCCCGTGCAGCACACCGAATAAGTCTAGTCTCTTCTTCTGTGGCATCCGAGGGCCCAGA
GCCTTTTCTCCTCCAGGGGAAACACCTTCAGTTCTTTTCACTGCTCCCACAGGTCACAGC
CTCCCCCATGCAGCCCCCGCTGTCATCACGGTCCCTATGAAAATGAGGGCACACAGGTTT
CTGGGTTGGGATGGCGTGAGCATCCCCGGCTCCCTCGGGCGAGGCGCCCTTCTCCAGCCC
GGCTGGGCTAACGCGCCTGTCTCTGCAGGGGGATTGATCATGGGCACAGGCATCGAGTCT
TCATCCCACAAGTACGGCCTGTTCCAGCACATCTGTACGGCCTACGAGCTGGTGCTGGCT
GATGGCAGCTTCGTGCGATGCACACCGGTGAGTTCAGAGCCCGGGGCTGTCCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               215-328, - strand, RNAz p=0.976135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-328, - strand, RNAz p=0.976135

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               21-346, gnl|bosTau2|chr3 (60270678-60270999)
               

               
               21-346, gnl|Hg17|chr1 (55053531-55053196)
               


               
               413-595, gnl|bosTau2|chr3 (60271231-60271413)
               

               
               413-595, gnl|Hg17|chr1 (55052946-55052759)
               

               
               413-595, gnl|Mm7|chr4 (105948619-105948806)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-346, gnl|bosTau2|chr3 (60270678-60270999)
               

               
               21-346, gnl|Hg17|chr1 (55053531-55053196)
               


               
               413-595, gnl|bosTau2|chr3 (60271231-60271413)
               

               
               413-595, gnl|Hg17|chr1 (55052946-55052759)
               

               
               413-595, gnl|Mm7|chr4 (105948619-105948806)

	21-346, gnl\|bosTau2\|chr3 (60270678-60270999)
	21-346, gnl\|Hg17\|chr1 (55053531-55053196)

	413-595, gnl\|bosTau2\|chr3 (60271231-60271413)
	413-595, gnl\|Hg17\|chr1 (55052946-55052759)
	413-595, gnl\|Mm7\|chr4 (105948619-105948806)