Non-Coding RNA Search

Liv1-LVRM10051F05

Sequence:


               
               AATTAACCAGAGGAAGCCAGCAGAGCAAGGCCAGCAGTGGGCAGTGCCAGGGAGGACCAG
CACCCAGGGGCCAGTCATGCACCCTCTGCATCTGACAGGTAGTAGACTCCTGTTTCCTGG
TCTCTCTGTGACCTGCTGCCTGTCCCCGGCCCCCATTTTCCTCTTTTGAGTCCTCCGCAG
GTGTGGGGACAGAAGCTCAGCCCTGGGATTGGCAGGGACAAGGGGAGGAGACTCTGCTTC
CCGTGTAGCCAGCCCTGCTTATCGATTCCCTAGAGCTGCTCACTGATCCAGCACAAGATG
GTTTAATTGAAGTCATTACAATAAATGGTGCAGAAAAGCAACACCCTTGGCCTGGCAGGA
GCCTCCCAGAGGCGAGGGAGGGCGCTGGGAACCCCAGTGGCTGCCACTGAAGTTGTGATC
TCACACTTGGCTAGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAACCAGAGGAAGCCAGCAGAGCAAGGCCAGCAGTGGGCAGTGCCAGGGAGGACCAG
CACCCAGGGGCCAGTCATGCACCCTCTGCATCTGACAGGTAGTAGACTCCTGTTTCCTGG
TCTCTCTGTGACCTGCTGCCTGTCCCCGGCCCCCATTTTCCTCTTTTGAGTCCTCCGCAG
GTGTGGGGACAGAAGCTCAGCCCTGGGATTGGCAGGGACAAGGGGAGGAGACTCTGCTTC
CCGTGTAGCCAGCCCTGCTTATCGATTCCCTAGAGCTGCTCACTGATCCAGCACAAGATG
GTTTAATTGAAGTCATTACAATAAATGGTGCAGAAAAGCAACACCCTTGGCCTGGCAGGA
GCCTCCCAGAGGCGAGGGAGGGCGCTGGGAACCCCAGTGGCTGCCACTGAAGTTGTGATC
TCACACTTGGCTAGGGTGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               41-138, - strand, RNAz p=0.947054
               

               
               80-231, - strand, RNAz p=0.633797
               

               
               178-296, + strand, RNAz p=0.528192

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-138, - strand, RNAz p=0.947054
               

               
               80-231, - strand, RNAz p=0.633797
               

               
               178-296, + strand, RNAz p=0.528192

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               179-254, + strand, RNAmicro p=0.999729

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               179-254, + strand, RNAmicro p=0.999729

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               41-397, gnl|bosTau2|chr15 (47581436-47581795)
               

               
               41-397, gnl|canFam2|chr18 (46694704-46694228)
               

               
               41-397, gnl|dasNov1|scaffold_24107 (43711-44217)
               

               
               41-397, gnl|hg17|chr11 (45711161-45711663)
               

               
               41-397, gnl|Hg17|chr11 (45711307-45711682)
               

               
               41-397, gnl|loxAfr1|scaffold_19744 (31910-31401)
               

               
               41-397, gnl|mm7|chr2 (92377472-92377107)
               

               
               41-397, gnl|oryCun1|scaffold_146306 (661-222)
               

               
               41-397, gnl|panTro1|chr9 (46219183-46219685)
               

               
               41-397, gnl|rheMac2|chr14 (26395491-26394991)
               

               
               41-397, gnl|rn3|chr3 (76813570-76813123)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-397, gnl|bosTau2|chr15 (47581436-47581795)
               

               
               41-397, gnl|canFam2|chr18 (46694704-46694228)
               

               
               41-397, gnl|dasNov1|scaffold_24107 (43711-44217)
               

               
               41-397, gnl|hg17|chr11 (45711161-45711663)
               

               
               41-397, gnl|Hg17|chr11 (45711307-45711682)
               

               
               41-397, gnl|loxAfr1|scaffold_19744 (31910-31401)
               

               
               41-397, gnl|mm7|chr2 (92377472-92377107)
               

               
               41-397, gnl|oryCun1|scaffold_146306 (661-222)
               

               
               41-397, gnl|panTro1|chr9 (46219183-46219685)
               

               
               41-397, gnl|rheMac2|chr14 (26395491-26394991)
               

               
               41-397, gnl|rn3|chr3 (76813570-76813123)

	41-138, - strand, RNAz p=0.947054
	80-231, - strand, RNAz p=0.633797
	178-296, + strand, RNAz p=0.528192

	41-397, gnl\|bosTau2\|chr15 (47581436-47581795)
	41-397, gnl\|canFam2\|chr18 (46694704-46694228)
	41-397, gnl\|dasNov1\|scaffold_24107 (43711-44217)
	41-397, gnl\|hg17\|chr11 (45711161-45711663)
	41-397, gnl\|Hg17\|chr11 (45711307-45711682)
	41-397, gnl\|loxAfr1\|scaffold_19744 (31910-31401)
	41-397, gnl\|mm7\|chr2 (92377472-92377107)
	41-397, gnl\|oryCun1\|scaffold_146306 (661-222)
	41-397, gnl\|panTro1\|chr9 (46219183-46219685)
	41-397, gnl\|rheMac2\|chr14 (26395491-26394991)
	41-397, gnl\|rn3\|chr3 (76813570-76813123)