Non-Coding RNA Search

Liv1-LVRM10064G03

Sequence:


               
               CGTACATTGATTTCTTTCTTTTTTCTTGTATTACTACAAGGATCCGTTTCTTCTGGCTTA
ATTCCAGAAACAACATGCNCTGTCTTTTTTCATCGTTGAGGAAAAACAGTCTGAAGGCAC
CATAATTCCTTAAATTGGATTTCAATTCTTGATCCCCTTATGTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTACATTGATTTCTTTCTTTTTTCTTGTATTACTACAAGGATCCGTTTCTTCTGGCTTA
ATTCCAGAAACAACATGCNCTGTCTTTTTTCATCGTTGAGGAAAAACAGTCTGAAGGCAC
CATAATTCCTTAAATTGGATTTCAATTCTTGATCCCCTTATGTTCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3-94, - strand, RNAz p=0.97674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-94, - strand, RNAz p=0.97674

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-166, gnl|bosTau2|chr26 (22313242-22313406)
               

               
               3-166, gnl|canFam2|chr28 (26995936-26996129)
               

               
               3-166, gnl|danRer3|chr12 (28776570-28776374)
               

               
               3-166, gnl|dasNov1|scaffold_16445 (3337-3133)
               

               
               3-166, gnl|echTel1|scaffold_285880 (86043-85846)
               

               
               3-166, gnl|galGal2|chr6 (26140004-26140180)
               

               
               3-166, gnl|hg17|chr10 (114735200-114735395)
               

               
               3-166, gnl|Hg17|chr10 (114735199-114735362)
               

               
               3-166, gnl|loxAfr1|scaffold_30476 (29634-29826)
               

               
               3-166, gnl|mm7|chr19 (55688640-55688833)
               

               
               3-166, gnl|Mm7|chr19 (55688639-55688803)
               

               
               3-166, gnl|monDom2|scaffold_14 (49381615-49381427)
               

               
               3-166, gnl|oryCun1|scaffold_202878 (45813-45607)
               

               
               3-166, gnl|panTro1|chr8_random (6364034-6364229)
               

               
               3-166, gnl|rheMac2|chr9 (112644439-112644633)
               

               
               3-166, gnl|rn3|chr1 (262274434-262274627)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-166, gnl|bosTau2|chr26 (22313242-22313406)
               

               
               3-166, gnl|canFam2|chr28 (26995936-26996129)
               

               
               3-166, gnl|danRer3|chr12 (28776570-28776374)
               

               
               3-166, gnl|dasNov1|scaffold_16445 (3337-3133)
               

               
               3-166, gnl|echTel1|scaffold_285880 (86043-85846)
               

               
               3-166, gnl|galGal2|chr6 (26140004-26140180)
               

               
               3-166, gnl|hg17|chr10 (114735200-114735395)
               

               
               3-166, gnl|Hg17|chr10 (114735199-114735362)
               

               
               3-166, gnl|loxAfr1|scaffold_30476 (29634-29826)
               

               
               3-166, gnl|mm7|chr19 (55688640-55688833)
               

               
               3-166, gnl|Mm7|chr19 (55688639-55688803)
               

               
               3-166, gnl|monDom2|scaffold_14 (49381615-49381427)
               

               
               3-166, gnl|oryCun1|scaffold_202878 (45813-45607)
               

               
               3-166, gnl|panTro1|chr8_random (6364034-6364229)
               

               
               3-166, gnl|rheMac2|chr9 (112644439-112644633)
               

               
               3-166, gnl|rn3|chr1 (262274434-262274627)

	3-166, gnl\|bosTau2\|chr26 (22313242-22313406)
	3-166, gnl\|canFam2\|chr28 (26995936-26996129)
	3-166, gnl\|danRer3\|chr12 (28776570-28776374)
	3-166, gnl\|dasNov1\|scaffold_16445 (3337-3133)
	3-166, gnl\|echTel1\|scaffold_285880 (86043-85846)
	3-166, gnl\|galGal2\|chr6 (26140004-26140180)
	3-166, gnl\|hg17\|chr10 (114735200-114735395)
	3-166, gnl\|Hg17\|chr10 (114735199-114735362)
	3-166, gnl\|loxAfr1\|scaffold_30476 (29634-29826)
	3-166, gnl\|mm7\|chr19 (55688640-55688833)
	3-166, gnl\|Mm7\|chr19 (55688639-55688803)
	3-166, gnl\|monDom2\|scaffold_14 (49381615-49381427)
	3-166, gnl\|oryCun1\|scaffold_202878 (45813-45607)
	3-166, gnl\|panTro1\|chr8_random (6364034-6364229)
	3-166, gnl\|rheMac2\|chr9 (112644439-112644633)
	3-166, gnl\|rn3\|chr1 (262274434-262274627)