Non-Coding RNA Search

Liv1-LVRM10079H04

Sequence:


               
               ATTTTAGGCTAGGCCCAGTAGAAAAAGCTGAACGATTAACTGATACATTTTTGCAGATAG
CAAACTAGTAGAAATCATAGGGGAATTTATTTCTAGGCATGGATGGCTATTTTCAGTTTT
TCTATGGCAACCTACAGGCAAGGCAAATTTTCAAGATCTGACTTTTGAAAACGAAACTTG
GATAAAAAAACATTTAGGGCTGTGAGTTCTGAGGCCTATTGCTGTCATAAGGGGTCACAA
ATGCATGAAATTTGGCAACGTAAAGTTGCTATTATCTCTAGTGGCTTCTAGTCATGGCCA
TAGACTTAAGAGTAATATTGCAACCCTATCATAGCCCACATGACCCTTTATTGAGCACCA
CTGTCTCTGCACATGTCAATGGAAGAGGACCACTAGCTCCCACAGATTTAGACAGTCTTA
TTTCCTATGGCCTCTCCGCTATCAATTTTGAATGGGCAAGTTCAAAAGCCAAATATAAAG
ATTCTCAGGTTAGAAACTTTCTAAATGGTGCCCAAGATAAATAAGTTTTTAAAGATCATT
TTCAGTTCTTAAATAGCTATNANATTCAATGTAGCATAACTCCTCNAATCTGAATAATGT
GTAATTGCAATGACATCATCTTTTCCAGTGATTTACTAGAGAACAATTTGTTGGGATTTT
CTGACACCACANATGTTCAGCAATTTACATTGATTACTTAATTTGATCCTTCCACCAAAC
CC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAGGCTAGGCCCAGTAGAAAAAGCTGAACGATTAACTGATACATTTTTGCAGATAG
CAAACTAGTAGAAATCATAGGGGAATTTATTTCTAGGCATGGATGGCTATTTTCAGTTTT
TCTATGGCAACCTACAGGCAAGGCAAATTTTCAAGATCTGACTTTTGAAAACGAAACTTG
GATAAAAAAACATTTAGGGCTGTGAGTTCTGAGGCCTATTGCTGTCATAAGGGGTCACAA
ATGCATGAAATTTGGCAACGTAAAGTTGCTATTATCTCTAGTGGCTTCTAGTCATGGCCA
TAGACTTAAGAGTAATATTGCAACCCTATCATAGCCCACATGACCCTTTATTGAGCACCA
CTGTCTCTGCACATGTCAATGGAAGAGGACCACTAGCTCCCACAGATTTAGACAGTCTTA
TTTCCTATGGCCTCTCCGCTATCAATTTTGAATGGGCAAGTTCAAAAGCCAAATATAAAG
ATTCTCAGGTTAGAAACTTTCTAAATGGTGCCCAAGATAAATAAGTTTTTAAAGATCATT
TTCAGTTCTTAAATAGCTATNANATTCAATGTAGCATAACTCCTCNAATCTGAATAATGT
GTAATTGCAATGACATCATCTTTTCCAGTGATTTACTAGAGAACAATTTGTTGGGATTTT
CTGACACCACANATGTTCAGCAATTTACATTGATTACTTAATTTGATCCTTCCACCAAAC
CC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               217-336, + strand, RNAz p=0.853755

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-336, + strand, RNAz p=0.853755

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-435, gnl|bosTau2|chr28 (25539828-25539388)
               

               
               1-435, gnl|Hg17|chr4 (74649310-74649755)
               


               
               440-721, gnl|bosTau2|chr28 (25539298-25539019)
               

               
               440-721, gnl|Hg17|chr4 (74649766-74650051)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-435, gnl|bosTau2|chr28 (25539828-25539388)
               

               
               1-435, gnl|Hg17|chr4 (74649310-74649755)
               


               
               440-721, gnl|bosTau2|chr28 (25539298-25539019)
               

               
               440-721, gnl|Hg17|chr4 (74649766-74650051)

	1-435, gnl\|bosTau2\|chr28 (25539828-25539388)
	1-435, gnl\|Hg17\|chr4 (74649310-74649755)

	440-721, gnl\|bosTau2\|chr28 (25539298-25539019)
	440-721, gnl\|Hg17\|chr4 (74649766-74650051)