Non-Coding RNA Search

Liv1-LVRM10101G09

Sequence:


               
               AGTTGATCCAGTGCCGTTCGACAGAGGAGGCGCTCCGGACGCTTCTGTAGCGCGGGATTA
AAGGCTGTTCCGACTCCGCAGCTCCGCTTCTGTCCGCCTCGGTGGCGCGTCCTGGGAAGC
GGGTGCTGGCTGGGGGCGCTGGGGGCCTGGCCGGGACTGGGAGCTGGTGGACCTGCCATG
TTCCGCAGGGTGGGCTGGCTGGTCCTATACAGCCTCGTGGTACTGCTCAGCTGTCTGTTC
TTCCTGAAGAGAGATGCCCAGCCAGCGAGGGGGCCTGTGGTGAGACAGCCCTTCTGGGCT
TCCTCAGGGCCCCGGCACAGCTCGTGTCCACCCAACCACACAGTGGCTAATTCCTTCCTG
TTCCTGCCTAACCGTCACCGCCTCTTCCTGACCTATCGCCACTGCCGCAACTTTTCCATC
TTGCTGGCGCCTTCAGGCTGTACTGAGGACACCTTTTTGCTCCTGGCCATCAAGTCACAG
CCTGGCCATGTGGAACAGCGTGCAGCCATCCGCAACACATGGGGCCGTGCAGGAAGCTGG
GCTAAAGGCCGGCAGCTGAAGCTGGTATTCCTCCTAGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGATCCAGTGCCGTTCGACAGAGGAGGCGCTCCGGACGCTTCTGTAGCGCGGGATTA
AAGGCTGTTCCGACTCCGCAGCTCCGCTTCTGTCCGCCTCGGTGGCGCGTCCTGGGAAGC
GGGTGCTGGCTGGGGGCGCTGGGGGCCTGGCCGGGACTGGGAGCTGGTGGACCTGCCATG
TTCCGCAGGGTGGGCTGGCTGGTCCTATACAGCCTCGTGGTACTGCTCAGCTGTCTGTTC
TTCCTGAAGAGAGATGCCCAGCCAGCGAGGGGGCCTGTGGTGAGACAGCCCTTCTGGGCT
TCCTCAGGGCCCCGGCACAGCTCGTGTCCACCCAACCACACAGTGGCTAATTCCTTCCTG
TTCCTGCCTAACCGTCACCGCCTCTTCCTGACCTATCGCCACTGCCGCAACTTTTCCATC
TTGCTGGCGCCTTCAGGCTGTACTGAGGACACCTTTTTGCTCCTGGCCATCAAGTCACAG
CCTGGCCATGTGGAACAGCGTGCAGCCATCCGCAACACATGGGGCCGTGCAGGAAGCTGG
GCTAAAGGCCGGCAGCTGAAGCTGGTATTCCTCCTAGGAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               206-322, - strand, RNAz p=0.877793
               

               
               363-482, - strand, RNAz p=0.611472

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-322, - strand, RNAz p=0.877793
               

               
               363-482, - strand, RNAz p=0.611472

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               169-578, gnl|bosTau2|chr17 (29087740-29087329)
               

               
               169-578, gnl|Hg17|chr12 (121215744-121216157)
               

               
               169-578, gnl|Mm7|chr5 (122754083-122754494)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-578, gnl|bosTau2|chr17 (29087740-29087329)
               

               
               169-578, gnl|Hg17|chr12 (121215744-121216157)
               

               
               169-578, gnl|Mm7|chr5 (122754083-122754494)

	206-322, - strand, RNAz p=0.877793
	363-482, - strand, RNAz p=0.611472

	169-578, gnl\|bosTau2\|chr17 (29087740-29087329)
	169-578, gnl\|Hg17\|chr12 (121215744-121216157)
	169-578, gnl\|Mm7\|chr5 (122754083-122754494)