Non-Coding RNA Search

Liv1-LVRM10102D10

Sequence:


               
               TTTTTCCTAACGAGTCTGCCGTCTTACGAGGCCTTTCTGCGTCATGCTTGCAGTCCGATA
GCTCCTTAGATATTAACAAAAGCAGCAGAGCCGCATGAGAAGCACTCCTCAGTCGAGCAC
CCTCGGCCTCGGCGGTATCTCTGGGAGCAAATGTGACAAATATAATCAAAAATGACTTAA
AGAGTCAGCTACCACAAGCCAAACTTAAAAAAAAAAAAAAAAAAGCTCTGAAAAGACCGA
AAATGGAAACATATTACAGTTATCTGCATTCACAGTACAGAACAACTTGGGTCGTATTTA
AGATAATTCTCTAGTGCCTGCTATTTTTAGCCCAAGGGTAAGCTCCTTTAAGAGTCTTTT
GGCGTTGCATCCCTTTAACCTGGCCTAACCAACTAAGCCAATAAGCTGTCTGATTTTCCT
TGTCTGTCCGGGAGGAAGAGAGAGAGCTAAAACAAACCATTTTCGGGGAAACTGTTCAGC
CTATCTTGTATGAAGAGCTTTTTTTTTTCCTATAGATTTTTAAAACATCCCAATATTAAG
TGGTGCCTGTCAGAGACCAAAATGTCAAACTTTGCCGTTTTGAAATTGTAGGCTCACGGT
TATAAAAAGAGGATTTTATAGGCCTAGTCTAATGGAAATAAACATTACTCCATTACCTTC
AGTAAAACCAAATCTTTACAGTGCAAGCTATCGTTATTAATGTCTATGAGAAGAAAGAAA
CGTGTCCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCTAACGAGTCTGCCGTCTTACGAGGCCTTTCTGCGTCATGCTTGCAGTCCGATA
GCTCCTTAGATATTAACAAAAGCAGCAGAGCCGCATGAGAAGCACTCCTCAGTCGAGCAC
CCTCGGCCTCGGCGGTATCTCTGGGAGCAAATGTGACAAATATAATCAAAAATGACTTAA
AGAGTCAGCTACCACAAGCCAAACTTAAAAAAAAAAAAAAAAAAGCTCTGAAAAGACCGA
AAATGGAAACATATTACAGTTATCTGCATTCACAGTACAGAACAACTTGGGTCGTATTTA
AGATAATTCTCTAGTGCCTGCTATTTTTAGCCCAAGGGTAAGCTCCTTTAAGAGTCTTTT
GGCGTTGCATCCCTTTAACCTGGCCTAACCAACTAAGCCAATAAGCTGTCTGATTTTCCT
TGTCTGTCCGGGAGGAAGAGAGAGAGCTAAAACAAACCATTTTCGGGGAAACTGTTCAGC
CTATCTTGTATGAAGAGCTTTTTTTTTTCCTATAGATTTTTAAAACATCCCAATATTAAG
TGGTGCCTGTCAGAGACCAAAATGTCAAACTTTGCCGTTTTGAAATTGTAGGCTCACGGT
TATAAAAAGAGGATTTTATAGGCCTAGTCTAATGGAAATAAACATTACTCCATTACCTTC
AGTAAAACCAAATCTTTACAGTGCAAGCTATCGTTATTAATGTCTATGAGAAGAAAGAAA
CGTGTCCGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               162-273, - strand, RNAz p=0.554819
               

               
               314-433, - strand, RNAz p=0.572262

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-273, - strand, RNAz p=0.554819
               

               
               314-433, - strand, RNAz p=0.572262

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-730, gnl|bosTau2|chr6 (21017049-21016348)
               

               
               9-730, gnl|Hg17|chr4 (23544863-23544159)
               

               
               9-730, gnl|Mm7|chr5 (50903134-50902407)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-730, gnl|bosTau2|chr6 (21017049-21016348)
               

               
               9-730, gnl|Hg17|chr4 (23544863-23544159)
               

               
               9-730, gnl|Mm7|chr5 (50903134-50902407)

	162-273, - strand, RNAz p=0.554819
	314-433, - strand, RNAz p=0.572262

	9-730, gnl\|bosTau2\|chr6 (21017049-21016348)
	9-730, gnl\|Hg17\|chr4 (23544863-23544159)
	9-730, gnl\|Mm7\|chr5 (50903134-50902407)