Non-Coding RNA Search

Liv1-LVRM10102F09

Sequence:


               
               TTTTTCTCCTGACTGGTGGAAGATGGTTTTGTGTCTGAGCCAGCTTTGATGGCTCACTCC
CCTTTGCTTCAGGACTCTGGAGAAAGGAAGGCAGGCAGGACACCTGCCACGTGTTGAATG
CCTGCCCAGTGATGGGGTTGTGCAGCAGGTCCTGGCCTTGCTAACCCCTTTTGGAGGGGA
GTAAGTAAGGATGTGATGGCACCTTGTTCAGAACAAGTTCAGGTTCTAGTTTCTGAAAGG
GGAAACAAGACTGACATCCCCCAGTGTGAGCCGTATTTGGCTGGGATCCCATAACTTCAG
GCATGAGATGGTGGAATTAACTTAAGCATTTCTTAGAGGTGTATGTGTGTCCCCCTTTAC
TGCCACTGTGAGATCACTCCATTGCTGGCTCTTTAGAAAACCTGAATCCTACTTCTGTAG
TCCTGTAGTTCTACAGTGCTGTAGTTTGGTAGTCTGTGAAGAGGCCTCAGGCCAGGACCC
ACCTGCTCATTTAATTCCGATCATGTTTGTTGCTCACTTCCTTTTAGATCTAAAAACCAA
GGCAAGTCTCAGCTTCTAGTCCTTTGTTAATTTAATGGATGTCTTTTCAGCACCTGCTGG
GGGCCTGTCCCAGTCTTTTTTCTGGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTCCTGACTGGTGGAAGATGGTTTTGTGTCTGAGCCAGCTTTGATGGCTCACTCC
CCTTTGCTTCAGGACTCTGGAGAAAGGAAGGCAGGCAGGACACCTGCCACGTGTTGAATG
CCTGCCCAGTGATGGGGTTGTGCAGCAGGTCCTGGCCTTGCTAACCCCTTTTGGAGGGGA
GTAAGTAAGGATGTGATGGCACCTTGTTCAGAACAAGTTCAGGTTCTAGTTTCTGAAAGG
GGAAACAAGACTGACATCCCCCAGTGTGAGCCGTATTTGGCTGGGATCCCATAACTTCAG
GCATGAGATGGTGGAATTAACTTAAGCATTTCTTAGAGGTGTATGTGTGTCCCCCTTTAC
TGCCACTGTGAGATCACTCCATTGCTGGCTCTTTAGAAAACCTGAATCCTACTTCTGTAG
TCCTGTAGTTCTACAGTGCTGTAGTTTGGTAGTCTGTGAAGAGGCCTCAGGCCAGGACCC
ACCTGCTCATTTAATTCCGATCATGTTTGTTGCTCACTTCCTTTTAGATCTAAAAACCAA
GGCAAGTCTCAGCTTCTAGTCCTTTGTTAATTTAATGGATGTCTTTTCAGCACCTGCTGG
GGGCCTGTCCCAGTCTTTTTTCTGGGAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.707726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.707726

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-424, gnl|bosTau2|chr7 (28921219-28921644)
               

               
               1-424, gnl|canFam2|chr20 (60438250-60437868)
               

               
               1-424, gnl|hg17|chr19 (1542417-1542932)
               

               
               1-424, gnl|loxAfr1|scaffold_30208 (14714-14225)
               

               
               1-424, gnl|panTro1|chr20 (1617845-1618358)
               

               
               1-424, gnl|rheMac2|chr19 (1365434-1365956)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr7 (28921219-28921644)
               

               
               1-424, gnl|canFam2|chr20 (60438250-60437868)
               

               
               1-424, gnl|hg17|chr19 (1542417-1542932)
               

               
               1-424, gnl|loxAfr1|scaffold_30208 (14714-14225)
               

               
               1-424, gnl|panTro1|chr20 (1617845-1618358)
               

               
               1-424, gnl|rheMac2|chr19 (1365434-1365956)

	1-424, gnl\|bosTau2\|chr7 (28921219-28921644)
	1-424, gnl\|canFam2\|chr20 (60438250-60437868)
	1-424, gnl\|hg17\|chr19 (1542417-1542932)
	1-424, gnl\|loxAfr1\|scaffold_30208 (14714-14225)
	1-424, gnl\|panTro1\|chr20 (1617845-1618358)
	1-424, gnl\|rheMac2\|chr19 (1365434-1365956)