Non-Coding RNA Search

Liv1-LVRM10106H07

Sequence:


               
               TGCATTCACTGCCTGACTATCCATCCTCCAGATGATTTATAAAGCAGCAGCTCTGCTATA
TTCATTCCAGGGGTGGATATTTAGTTAAATAGACTTGGTTCACTGTCCTCATGGGCCAGT
AGGGGACCCGAGGGTAGAAGTAAGAAATTGCAGGACAGAAGTTGAGGGATGTGCCAGGAG
CAGGAGGAAGGAGAATCAACTCAGTCCAGCTTGGCCAGGGAGATTTTCCCTGCAGTGTGG
GCTGAGGCCAGAGCCTTAAAGCAGCCGGGCACGTGTCGGGCTCTGCACCGGAGCTGCTCG
GTGACTAGACTGGGGCTCAGGTGTTGGATGACCAGGAACAGGAGCCAGATCCAGCCCCAA
GGTGATGGAGAAGCATGGAAGGTTTTACATGAAATGAGGCAATCAGGGTTTGCATTCTAG
AAAGATGCCCTTGCCCAGTCTGTCCAGGGTACATTTTTCTTTTTCTCCCTTTCCTGATTT
TGTTCAGGACATACGTATGACAGGCTGGAAACACTCCTCTCCACACCCCCTCACACCTAG
TGTGGCCACATGTTCCAGGCCTGGGATTGAGCAAGTGGGGCTTCCTGGAAAGCTTTTCAT
TGGCCCTTCCCTCTTCCTTGTGCTTGGAACTTGGACCTAATGCCTGGAAGCCCTGCAGCC
GTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATTCACTGCCTGACTATCCATCCTCCAGATGATTTATAAAGCAGCAGCTCTGCTATA
TTCATTCCAGGGGTGGATATTTAGTTAAATAGACTTGGTTCACTGTCCTCATGGGCCAGT
AGGGGACCCGAGGGTAGAAGTAAGAAATTGCAGGACAGAAGTTGAGGGATGTGCCAGGAG
CAGGAGGAAGGAGAATCAACTCAGTCCAGCTTGGCCAGGGAGATTTTCCCTGCAGTGTGG
GCTGAGGCCAGAGCCTTAAAGCAGCCGGGCACGTGTCGGGCTCTGCACCGGAGCTGCTCG
GTGACTAGACTGGGGCTCAGGTGTTGGATGACCAGGAACAGGAGCCAGATCCAGCCCCAA
GGTGATGGAGAAGCATGGAAGGTTTTACATGAAATGAGGCAATCAGGGTTTGCATTCTAG
AAAGATGCCCTTGCCCAGTCTGTCCAGGGTACATTTTTCTTTTTCTCCCTTTCCTGATTT
TGTTCAGGACATACGTATGACAGGCTGGAAACACTCCTCTCCACACCCCCTCACACCTAG
TGTGGCCACATGTTCCAGGCCTGGGATTGAGCAAGTGGGGCTTCCTGGAAAGCTTTTCAT
TGGCCCTTCCCTCTTCCTTGTGCTTGGAACTTGGACCTAATGCCTGGAAGCCCTGCAGCC
GTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               541-660, - strand, RNAz p=0.971551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-660, - strand, RNAz p=0.971551

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               19-209, gnl|bosTau2|chr25 (11115053-11114867)
               

               
               19-209, gnl|Hg17|chr16 (12686184-12685982)
               


               
               240-660, gnl|bosTau2|chr25 (11114758-11114346)
               

               
               240-660, gnl|Hg17|chr16 (12685884-12685327)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-209, gnl|bosTau2|chr25 (11115053-11114867)
               

               
               19-209, gnl|Hg17|chr16 (12686184-12685982)
               


               
               240-660, gnl|bosTau2|chr25 (11114758-11114346)
               

               
               240-660, gnl|Hg17|chr16 (12685884-12685327)

	19-209, gnl\|bosTau2\|chr25 (11115053-11114867)
	19-209, gnl\|Hg17\|chr16 (12686184-12685982)

	240-660, gnl\|bosTau2\|chr25 (11114758-11114346)
	240-660, gnl\|Hg17\|chr16 (12685884-12685327)