Non-Coding RNA Search

Liv1-LVRM10122D03

Sequence:


               
               ATTTATCACACGTATTTTTTCCCATCACATTATCTCCCTACTCAAAGGTTTAGGCATGAC
TCCAGTCTTATCTACAAATTATAAGTGAAATCGGAAACATGGCAGCTTTCTGGTTAACAT
GGACATGCAAAAGATGCTTCAAGATACAGCATGGATTCTTTTTTTGGCCTGAAACGCTAA
GCCAATTAGCTGGACTATTACCAGATTTCTATTTCTGGTTTTCACTATTAATGTTGATTA
TATTAATCACGTGGCTGCTGAGTCTTCGCTTTATTTTGTGTTGTTTCTAGGCACTGACTT
GCCCCCTGAATCTGGCAGTGTGGCTCCTGTATACACACAGAACCTCCAAAAGAAATGGGA
CACCTTAAAAACCTTCTAATTCTTCCTGTATTTCTTCATTTGTCTGTTTTCTGATGTACC
ATTTCCTAGCTATGCTCTGTCTTAGATATATATCAAAGAGACATAGCTTCAGCTGAGTGG
ACCAAATAAAATGACCAATCTCTGTTTGCTGGGATCCTTTTTCTTTACTTTTGCTCTTTG
GCCAGTTAATGAAATTTTGCTTTCTCTTATTCTTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATCACACGTATTTTTTCCCATCACATTATCTCCCTACTCAAAGGTTTAGGCATGAC
TCCAGTCTTATCTACAAATTATAAGTGAAATCGGAAACATGGCAGCTTTCTGGTTAACAT
GGACATGCAAAAGATGCTTCAAGATACAGCATGGATTCTTTTTTTGGCCTGAAACGCTAA
GCCAATTAGCTGGACTATTACCAGATTTCTATTTCTGGTTTTCACTATTAATGTTGATTA
TATTAATCACGTGGCTGCTGAGTCTTCGCTTTATTTTGTGTTGTTTCTAGGCACTGACTT
GCCCCCTGAATCTGGCAGTGTGGCTCCTGTATACACACAGAACCTCCAAAAGAAATGGGA
CACCTTAAAAACCTTCTAATTCTTCCTGTATTTCTTCATTTGTCTGTTTTCTGATGTACC
ATTTCCTAGCTATGCTCTGTCTTAGATATATATCAAAGAGACATAGCTTCAGCTGAGTGG
ACCAAATAAAATGACCAATCTCTGTTTGCTGGGATCCTTTTTCTTTACTTTTGCTCTTTG
GCCAGTTAATGAAATTTTGCTTTCTCTTATTCTTTTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               161-280, - strand, RNAz p=0.857009

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.857009

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-572, gnl|bosTau2|chr6 (9701225-9700669)
               

               
               2-572, gnl|canFam2|chr32 (24515117-24515788)
               

               
               2-572, gnl|dasNov1|scaffold_146437 (894-1548)
               

               
               2-572, gnl|echTel1|scaffold_97233 (3298-2614)
               

               
               2-572, gnl|hg17|chr4 (100864303-100864982)
               

               
               2-572, gnl|Hg17|chr4 (100864523-100865068)
               

               
               2-572, gnl|loxAfr1|scaffold_2458 (23698-24354)
               

               
               2-572, gnl|mm7|chr3 (137929744-137929102)
               

               
               2-572, gnl|Mm7|chr3 (137929541-137929017)
               

               
               2-572, gnl|oryCun1|scaffold_206855 (32227-31586)
               

               
               2-572, gnl|panTro1|chr3_random (3181743-3182421)
               

               
               2-572, gnl|rheMac2|chr5 (92555672-92556349)
               

               
               2-572, gnl|rn3|chr2 (235631318-235630672)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-572, gnl|bosTau2|chr6 (9701225-9700669)
               

               
               2-572, gnl|canFam2|chr32 (24515117-24515788)
               

               
               2-572, gnl|dasNov1|scaffold_146437 (894-1548)
               

               
               2-572, gnl|echTel1|scaffold_97233 (3298-2614)
               

               
               2-572, gnl|hg17|chr4 (100864303-100864982)
               

               
               2-572, gnl|Hg17|chr4 (100864523-100865068)
               

               
               2-572, gnl|loxAfr1|scaffold_2458 (23698-24354)
               

               
               2-572, gnl|mm7|chr3 (137929744-137929102)
               

               
               2-572, gnl|Mm7|chr3 (137929541-137929017)
               

               
               2-572, gnl|oryCun1|scaffold_206855 (32227-31586)
               

               
               2-572, gnl|panTro1|chr3_random (3181743-3182421)
               

               
               2-572, gnl|rheMac2|chr5 (92555672-92556349)
               

               
               2-572, gnl|rn3|chr2 (235631318-235630672)

	2-572, gnl\|bosTau2\|chr6 (9701225-9700669)
	2-572, gnl\|canFam2\|chr32 (24515117-24515788)
	2-572, gnl\|dasNov1\|scaffold_146437 (894-1548)
	2-572, gnl\|echTel1\|scaffold_97233 (3298-2614)
	2-572, gnl\|hg17\|chr4 (100864303-100864982)
	2-572, gnl\|Hg17\|chr4 (100864523-100865068)
	2-572, gnl\|loxAfr1\|scaffold_2458 (23698-24354)
	2-572, gnl\|mm7\|chr3 (137929744-137929102)
	2-572, gnl\|Mm7\|chr3 (137929541-137929017)
	2-572, gnl\|oryCun1\|scaffold_206855 (32227-31586)
	2-572, gnl\|panTro1\|chr3_random (3181743-3182421)
	2-572, gnl\|rheMac2\|chr5 (92555672-92556349)
	2-572, gnl\|rn3\|chr2 (235631318-235630672)