Non-Coding RNA Search

Liv1-LVRM10122F10

Sequence:


               
               ACAAGTCTTTCCGCCTCCCCAGCCTGCCTGGAAGCTGGGAGCGGGATTATGGTGGCCTGA
CCAGCAAACGCCACCACCACCACCACCGTAGGAGACCGGAGCCCCTGCCTCTTCCCCTGC
TGCCGCCTCACCAAGTGGACCAGGAAAACAGCCTCCGACCTGCCATGCCCGCCCCTCCCA
ACCCCCCGGGGGGCCCGGACCGTCCTCTCCCAGACCTCTGCTGAGGCTGGACCGCCGGCC
AGATGTAGCCGGGCTCGGATCCGTCTCCTCCCCTTCTCTCTCTCTGTGGATCTCTCCTGC
CTGCCACCCACCGCCTGGACCGGGGCTGGTGAAGGGGCCTGGAGGCTCTGGAGCCCTGAT
GCCTCACAGCTCATTTCCCTGAGAAGCCACCTCCAGCACCCAGAGTTTGGGACAGACCCT
AGGGACGGACACGGGGCCGCAGGGAGCCCAGGGCGCCCCAACGCCAGGGCCTACCATGGC
CCAAGCGCTGCCCTGGCTCCTGCTATGGATGGGCTCCGGGGTGCTGCCTGCCCACAGCCC
CCAGCCTGGCATCCGGCTACCCCTGCGAAGCGGCCTTGGGGGGGCACCCCTGGGGCTAAG
GCTGCCCCGGGAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGTCTTTCCGCCTCCCCAGCCTGCCTGGAAGCTGGGAGCGGGATTATGGTGGCCTGA
CCAGCAAACGCCACCACCACCACCACCGTAGGAGACCGGAGCCCCTGCCTCTTCCCCTGC
TGCCGCCTCACCAAGTGGACCAGGAAAACAGCCTCCGACCTGCCATGCCCGCCCCTCCCA
ACCCCCCGGGGGGCCCGGACCGTCCTCTCCCAGACCTCTGCTGAGGCTGGACCGCCGGCC
AGATGTAGCCGGGCTCGGATCCGTCTCCTCCCCTTCTCTCTCTCTGTGGATCTCTCCTGC
CTGCCACCCACCGCCTGGACCGGGGCTGGTGAAGGGGCCTGGAGGCTCTGGAGCCCTGAT
GCCTCACAGCTCATTTCCCTGAGAAGCCACCTCCAGCACCCAGAGTTTGGGACAGACCCT
AGGGACGGACACGGGGCCGCAGGGAGCCCAGGGCGCCCCAACGCCAGGGCCTACCATGGC
CCAAGCGCTGCCCTGGCTCCTGCTATGGATGGGCTCCGGGGTGCTGCCTGCCCACAGCCC
CCAGCCTGGCATCCGGCTACCCCTGCGAAGCGGCCTTGGGGGGGCACCCCTGGGGCTAAG
GCTGCCCCGGGAGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-500, - strand, RNAz p=0.998878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-500, - strand, RNAz p=0.998878

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               435-521, - strand, RNAmicro p=0.994608

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               435-521, - strand, RNAmicro p=0.994608

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               381-500, BP452814 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP452814.1|), blast E-value=0, identity=100% 
               

               
               381-500, LB01616.CR_P01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT812001.1|), 
blast E-value=3e-17, identity=85.83% 
               

               
               381-500, LB02821.CR_F21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV911573.1|), 
blast E-value=3e-17, identity=85.83% 
               

               
               381-500, LB02830.CR_L10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV914494.1|), 
blast E-value=3e-17, identity=85.83%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               381-500, BP452814 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP452814.1|), blast E-value=0, identity=100% 
               

               
               381-500, LB01616.CR_P01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT812001.1|), 
blast E-value=3e-17, identity=85.83% 
               

               
               381-500, LB02821.CR_F21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV911573.1|), 
blast E-value=3e-17, identity=85.83% 
               

               
               381-500, LB02830.CR_L10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV914494.1|), 
blast E-value=3e-17, identity=85.83%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-615, gnl|bosTau2|chr15 (13586231-13585629)
               

               
               1-615, gnl|Hg17|chr11 (116692182-116691582)
               

               
               1-615, gnl|Mm7|chr9 (45796706-45797290)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-615, gnl|bosTau2|chr15 (13586231-13585629)
               

               
               1-615, gnl|Hg17|chr11 (116692182-116691582)
               

               
               1-615, gnl|Mm7|chr9 (45796706-45797290)

	381-500, BP452814 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP452814.1\|), blast E-value=0, identity=100%
	381-500, LB01616.CR_P01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT812001.1\|), blast E-value=3e-17, identity=85.83%
	381-500, LB02821.CR_F21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV911573.1\|), blast E-value=3e-17, identity=85.83%
	381-500, LB02830.CR_L10 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV914494.1\|), blast E-value=3e-17, identity=85.83%

	1-615, gnl\|bosTau2\|chr15 (13586231-13585629)
	1-615, gnl\|Hg17\|chr11 (116692182-116691582)
	1-615, gnl\|Mm7\|chr9 (45796706-45797290)