Non-Coding RNA Search

Liv1-LVRM10124H08

Sequence:


               
               CTAAGAAATGATGTTACAGTTTTAACTGAGCATTAAACAAACAGGACACTGAATCTGGAG
TGTTAAAGCTCAAAGGGGGAGTTGCAGTTTTCTCGTTTCAAAAATGAGTAACAGGCACGA
CTTCCCAGCCAGCTGGGATCAGAGCTATTGACCCGATTCTCTGCTAGAGGCTCCTGTCCT
CAAGCGCGGTGCTCCAGAGAGGACAAGTCCAGGCTGTGGATGACAAGCCCCTAGTTTAGA
ATGGGTGGGGCCTTATGACTCAAAATCAACTCCGGGCTTGGCGCTCCTGCCCTGCAGCGT
CCTCCGCGTGGCGGAGGTGTGGATGCTCCCACCTGTGCGTGCGCATGCGTGTGAGTGCCC
AGGCGGGCGCGTGCGTGCTTTGTGCGCATGCGTGCGTCCCCCGTGCGTGCGTGCGTGCGT
GCGTGCGTATGTGCGCGCCCGCGCACGTGCCAGCCAGGACACGCCAGCCCAGCGCGAGGC
AGACGTGGTTGCCTCAGAGGTTTGCAGCTCGGCCTCAGGACGCAGGGCTTTTTTGGCTTC
CCAGCCTACGCTCCCTGCTCTGTCAGGAGCCTGTTTGTGTTGGCCTCGGACAAATGGCGG
GCGTTTTACACGCGCAGGCTTAATGAAGGCCCTGGAGACTTCTACGGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGAAATGATGTTACAGTTTTAACTGAGCATTAAACAAACAGGACACTGAATCTGGAG
TGTTAAAGCTCAAAGGGGGAGTTGCAGTTTTCTCGTTTCAAAAATGAGTAACAGGCACGA
CTTCCCAGCCAGCTGGGATCAGAGCTATTGACCCGATTCTCTGCTAGAGGCTCCTGTCCT
CAAGCGCGGTGCTCCAGAGAGGACAAGTCCAGGCTGTGGATGACAAGCCCCTAGTTTAGA
ATGGGTGGGGCCTTATGACTCAAAATCAACTCCGGGCTTGGCGCTCCTGCCCTGCAGCGT
CCTCCGCGTGGCGGAGGTGTGGATGCTCCCACCTGTGCGTGCGCATGCGTGTGAGTGCCC
AGGCGGGCGCGTGCGTGCTTTGTGCGCATGCGTGCGTCCCCCGTGCGTGCGTGCGTGCGT
GCGTGCGTATGTGCGCGCCCGCGCACGTGCCAGCCAGGACACGCCAGCCCAGCGCGAGGC
AGACGTGGTTGCCTCAGAGGTTTGCAGCTCGGCCTCAGGACGCAGGGCTTTTTTGGCTTC
CCAGCCTACGCTCCCTGCTCTGTCAGGAGCCTGTTTGTGTTGGCCTCGGACAAATGGCGG
GCGTTTTACACGCGCAGGCTTAATGAAGGCCCTGGAGACTTCTACGGATGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               408-520, + strand, RNAz p=0.905399
               

               
               538-651, - strand, RNAz p=0.923091

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-520, + strand, RNAz p=0.905399
               

               
               538-651, - strand, RNAz p=0.923091

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               4-246, gnl|bosTau2|chr1 (102567551-102567315)
               

               
               4-246, gnl|Hg17|chr21 (37209510-37209254)
               


               
               408-651, gnl|bosTau2|chr1 (102567190-102566941)
               

               
               408-651, gnl|canFam2|chr31 (34212359-34212513)
               

               
               408-651, gnl|echTel1|scaffold_212869 (3015-2828)
               

               
               408-651, gnl|hg17|chr21 (37208987-37209173)
               

               
               408-651, gnl|Hg17|chr21 (37209195-37208991)
               

               
               408-651, gnl|loxAfr1|scaffold_70109 (5756-5945)
               

               
               408-651, gnl|mm7|chr16 (94535827-94536007)
               

               
               408-651, gnl|oryCun1|scaffold_83702 (6189-6347)
               

               
               408-651, gnl|panTro1|chr22 (37240101-37240287)
               

               
               408-651, gnl|rheMac2|chr3 (9689166-9688979)
               

               
               408-651, gnl|rn3|chr11 (34560007-34560185)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-246, gnl|bosTau2|chr1 (102567551-102567315)
               

               
               4-246, gnl|Hg17|chr21 (37209510-37209254)
               


               
               408-651, gnl|bosTau2|chr1 (102567190-102566941)
               

               
               408-651, gnl|canFam2|chr31 (34212359-34212513)
               

               
               408-651, gnl|echTel1|scaffold_212869 (3015-2828)
               

               
               408-651, gnl|hg17|chr21 (37208987-37209173)
               

               
               408-651, gnl|Hg17|chr21 (37209195-37208991)
               

               
               408-651, gnl|loxAfr1|scaffold_70109 (5756-5945)
               

               
               408-651, gnl|mm7|chr16 (94535827-94536007)
               

               
               408-651, gnl|oryCun1|scaffold_83702 (6189-6347)
               

               
               408-651, gnl|panTro1|chr22 (37240101-37240287)
               

               
               408-651, gnl|rheMac2|chr3 (9689166-9688979)
               

               
               408-651, gnl|rn3|chr11 (34560007-34560185)

	408-520, + strand, RNAz p=0.905399
	538-651, - strand, RNAz p=0.923091

	4-246, gnl\|bosTau2\|chr1 (102567551-102567315)
	4-246, gnl\|Hg17\|chr21 (37209510-37209254)

	408-651, gnl\|bosTau2\|chr1 (102567190-102566941)
	408-651, gnl\|canFam2\|chr31 (34212359-34212513)
	408-651, gnl\|echTel1\|scaffold_212869 (3015-2828)
	408-651, gnl\|hg17\|chr21 (37208987-37209173)
	408-651, gnl\|Hg17\|chr21 (37209195-37208991)
	408-651, gnl\|loxAfr1\|scaffold_70109 (5756-5945)
	408-651, gnl\|mm7\|chr16 (94535827-94536007)
	408-651, gnl\|oryCun1\|scaffold_83702 (6189-6347)
	408-651, gnl\|panTro1\|chr22 (37240101-37240287)
	408-651, gnl\|rheMac2\|chr3 (9689166-9688979)
	408-651, gnl\|rn3\|chr11 (34560007-34560185)