Non-Coding RNA Search

Liv1-LVRM10126B05

Sequence:


               
               AAAGCATAAATATGTTAAATTTTCACAGCAGCTATATCATGTAGGACTAGTACTCAGATA
TGGAAATTGAGGCTCAATGAGATCAAATAGGTAACTCAGTTCACCTGCTGGTGAAAAATG
GATGAGGATTCCAATCCACATCTAACTCCAGCACCCCCTTGGAGGATGATTTCTTATTTA
TCTTTTCTACTTAACATGAAACTTAGCACATAGGAGGTACTCCTGGAAGGTCGAATGTTG
ATTGAATTAACAAACAGTGTCAAGTACAAAGCCATGTAGTAGATCCCTGGAGACTCAGTC
AGCTTTCCCCACTCCTACGCCTGTCCCCATTTAATGTCATTTCCGTAGAGAAGAAGAAGG
AGGCATTCTAATACGTTCTGAAGAGTAGAAGGGAATCCATAAAATCACAGAGAAATACAG
TGATTTTCCTCTATTCATCTGAGAAATATGTCAGTTTCAGTAATGAGAGGGTAACAGGCT
TGAATGTGCCAGTTTTTCATTTGGAAGGAATGCACTGCGAAGATAATTCAGTATTAACTT
GGGGAAACCATTTTCAATTTAGTGAGTCCTCTGAACATTAACGGAAGCATTCTGACTGTG
GCTCCTCGAATACAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCATAAATATGTTAAATTTTCACAGCAGCTATATCATGTAGGACTAGTACTCAGATA
TGGAAATTGAGGCTCAATGAGATCAAATAGGTAACTCAGTTCACCTGCTGGTGAAAAATG
GATGAGGATTCCAATCCACATCTAACTCCAGCACCCCCTTGGAGGATGATTTCTTATTTA
TCTTTTCTACTTAACATGAAACTTAGCACATAGGAGGTACTCCTGGAAGGTCGAATGTTG
ATTGAATTAACAAACAGTGTCAAGTACAAAGCCATGTAGTAGATCCCTGGAGACTCAGTC
AGCTTTCCCCACTCCTACGCCTGTCCCCATTTAATGTCATTTCCGTAGAGAAGAAGAAGG
AGGCATTCTAATACGTTCTGAAGAGTAGAAGGGAATCCATAAAATCACAGAGAAATACAG
TGATTTTCCTCTATTCATCTGAGAAATATGTCAGTTTCAGTAATGAGAGGGTAACAGGCT
TGAATGTGCCAGTTTTTCATTTGGAAGGAATGCACTGCGAAGATAATTCAGTATTAACTT
GGGGAAACCATTTTCAATTTAGTGAGTCCTCTGAACATTAACGGAAGCATTCTGACTGTG
GCTCCTCGAATACAAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               93-211, - strand, RNAz p=0.890221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-211, - strand, RNAz p=0.890221

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               11-618, gnl|bosTau2|chr4 (3994582-3995176)
               

               
               11-618, gnl|canFam2|chr14 (25798267-25798864)
               

               
               11-618, gnl|dasNov1|scaffold_88557 (2829-3436)
               

               
               11-618, gnl|echTel1|scaffold_213162 (5836-6378)
               

               
               11-618, gnl|hg17|chr7 (6970697-6971295)
               

               
               11-618, gnl|Hg17|chr7 (6971445-6970803)
               

               
               11-618, gnl|mm7|chr6 (7777344-7777888)
               

               
               11-618, gnl|panTro1|chr6 (7432462-7433117)
               

               
               11-618, gnl|rheMac2|chr3 (119248525-119247927)
               

               
               11-618, gnl|rn3|chr4 (33007102-33007663)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-618, gnl|bosTau2|chr4 (3994582-3995176)
               

               
               11-618, gnl|canFam2|chr14 (25798267-25798864)
               

               
               11-618, gnl|dasNov1|scaffold_88557 (2829-3436)
               

               
               11-618, gnl|echTel1|scaffold_213162 (5836-6378)
               

               
               11-618, gnl|hg17|chr7 (6970697-6971295)
               

               
               11-618, gnl|Hg17|chr7 (6971445-6970803)
               

               
               11-618, gnl|mm7|chr6 (7777344-7777888)
               

               
               11-618, gnl|panTro1|chr6 (7432462-7433117)
               

               
               11-618, gnl|rheMac2|chr3 (119248525-119247927)
               

               
               11-618, gnl|rn3|chr4 (33007102-33007663)

	11-618, gnl\|bosTau2\|chr4 (3994582-3995176)
	11-618, gnl\|canFam2\|chr14 (25798267-25798864)
	11-618, gnl\|dasNov1\|scaffold_88557 (2829-3436)
	11-618, gnl\|echTel1\|scaffold_213162 (5836-6378)
	11-618, gnl\|hg17\|chr7 (6970697-6971295)
	11-618, gnl\|Hg17\|chr7 (6971445-6970803)
	11-618, gnl\|mm7\|chr6 (7777344-7777888)
	11-618, gnl\|panTro1\|chr6 (7432462-7433117)
	11-618, gnl\|rheMac2\|chr3 (119248525-119247927)
	11-618, gnl\|rn3\|chr4 (33007102-33007663)