Non-Coding RNA Search

Liv1-LVRM10130E06

Sequence:


               
               ATACTTCTGCTTGAGGAAATAATTCAGGAACCCTGAGTAGAAAGTCTCCTCTCTCCTAGA
GTATGTGTAAATCATATTATCTGCTCCACTGTTTCAAGGAGAGTATAGAAAACATCGTCT
ACACAATGTCAAAACTGCACGGATGGTCAGTGTTGACCAGAAGTCTGGTAAAAATGGGTC
CTTGAATTCATTATAAATTGGCAGAGTCCTTTTAGAAAACATTTTGGCAGTTTCTTTCAA
GAGCCACAATAATATCGGTACCCTTTGACTCAGTAATTTCATTTCTGGGAATCTCTCAGA
GGAAAGAATCCAAAATATGGAAAAAGTGATATGCATGAAAATAATCATTGTAGAGTTATT
TAAAATAATAATAATAATAATAAAACCCTTAGAAACATCCATATGTACAATAGGAACATA
ATTAAGTGAATTTTACCTGTGTAAAAATATGAATATGGAAAAACTTAGACAGTAATACAT
ATAAATTCTAATGAAAGTATTAAGATGATACATATCCATAATCCATATATATTTTTTAGT
TGCAAGCAATAGACATGAACTCTGGCTAATTTAGTCAATAAAATAATTGTTCGAGGGACA
TGGGGTTGTTTGTAGAATCCAGGAAAAGTCTGAATAAGCAAACCTTTGGGGAGGGAAGGA
ATGAGGACAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTTCTGCTTGAGGAAATAATTCAGGAACCCTGAGTAGAAAGTCTCCTCTCTCCTAGA
GTATGTGTAAATCATATTATCTGCTCCACTGTTTCAAGGAGAGTATAGAAAACATCGTCT
ACACAATGTCAAAACTGCACGGATGGTCAGTGTTGACCAGAAGTCTGGTAAAAATGGGTC
CTTGAATTCATTATAAATTGGCAGAGTCCTTTTAGAAAACATTTTGGCAGTTTCTTTCAA
GAGCCACAATAATATCGGTACCCTTTGACTCAGTAATTTCATTTCTGGGAATCTCTCAGA
GGAAAGAATCCAAAATATGGAAAAAGTGATATGCATGAAAATAATCATTGTAGAGTTATT
TAAAATAATAATAATAATAATAAAACCCTTAGAAACATCCATATGTACAATAGGAACATA
ATTAAGTGAATTTTACCTGTGTAAAAATATGAATATGGAAAAACTTAGACAGTAATACAT
ATAAATTCTAATGAAAGTATTAAGATGATACATATCCATAATCCATATATATTTTTTAGT
TGCAAGCAATAGACATGAACTCTGGCTAATTTAGTCAATAAAATAATTGTTCGAGGGACA
TGGGGTTGTTTGTAGAATCCAGGAAAAGTCTGAATAAGCAAACCTTTGGGGAGGGAAGGA
ATGAGGACAGCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               239-398, - strand, RNAz p=0.912167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-398, - strand, RNAz p=0.912167

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-674, gnl|bosTau2|chr11 (27953628-27953093)
               

               
               124-674, gnl|Hg17|chr11 (95676176-95675449)
               

               
               124-674, gnl|Mm7|chr9 (13264608-13265069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-674, gnl|bosTau2|chr11 (27953628-27953093)
               

               
               124-674, gnl|Hg17|chr11 (95676176-95675449)
               

               
               124-674, gnl|Mm7|chr9 (13264608-13265069)

	124-674, gnl\|bosTau2\|chr11 (27953628-27953093)
	124-674, gnl\|Hg17\|chr11 (95676176-95675449)
	124-674, gnl\|Mm7\|chr9 (13264608-13265069)