Non-Coding RNA Search

Liv1-LVRM10138B09

Sequence:


               
               ATCTTCCCCTCTGCCTCTGAACAGTTGGAAAGCAAGGGTCTCTTTCTTCTTATCGCCCTT
GCAGCCATTATCTCCAGCTGCTTTTTATTAGAAATGCCCACACAATTCTGAGTAGTAAGG
GTGACATCTGTTGATAAGTTAAACCATATCCCACCCTAGTCAGGAAACAGACAGCCTCAA
TCCTCGCAGAGGGAAGCTTCAGGGCCAATCTCAAAGAGCATTTCGGTTTTAGCAATAAAA
GGGACTCTCTTCCATTATTTCATTTTTTTCCCTACCCTCCCATCTGGGAGAATCACGTGT
CTTTGAAAGACTGGGTCAACAGGAGCAAAAAAAAAAAAAAGGGGGGGGGAGCCCAAATAA
TATTATAATAGCTGGTGTGGGAATGGCAGGTAATTTATACTTCACTGATGTGTGGCTCGA
GCAATTTTAAGGGCGAAATGTTAGCTTTGGAAGAGATGAAAGAAAAATGAAAACATTTAT
TTGGTTAAATAGCTAAGTAAATAAACTGCCTATCAGACTCTCCCAGCTGTCAAGTCAAAG
TAGCAGCTGTAACAATGGGGAATTGTTTGGTCTGTCTCCCTTCGTAACAATAGATATTGC
CATAAATAATGTCACTGTCATTTTTTTAATACCGATCTTGATAGTGGGAACCCAAGACAT
ATAAAATATTACCAGATGGATTTTTTATGTTCAAAGAAGAAGAAAGCAGAACTTCAGATG
CT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTCCCCTCTGCCTCTGAACAGTTGGAAAGCAAGGGTCTCTTTCTTCTTATCGCCCTT
GCAGCCATTATCTCCAGCTGCTTTTTATTAGAAATGCCCACACAATTCTGAGTAGTAAGG
GTGACATCTGTTGATAAGTTAAACCATATCCCACCCTAGTCAGGAAACAGACAGCCTCAA
TCCTCGCAGAGGGAAGCTTCAGGGCCAATCTCAAAGAGCATTTCGGTTTTAGCAATAAAA
GGGACTCTCTTCCATTATTTCATTTTTTTCCCTACCCTCCCATCTGGGAGAATCACGTGT
CTTTGAAAGACTGGGTCAACAGGAGCAAAAAAAAAAAAAAGGGGGGGGGAGCCCAAATAA
TATTATAATAGCTGGTGTGGGAATGGCAGGTAATTTATACTTCACTGATGTGTGGCTCGA
GCAATTTTAAGGGCGAAATGTTAGCTTTGGAAGAGATGAAAGAAAAATGAAAACATTTAT
TTGGTTAAATAGCTAAGTAAATAAACTGCCTATCAGACTCTCCCAGCTGTCAAGTCAAAG
TAGCAGCTGTAACAATGGGGAATTGTTTGGTCTGTCTCCCTTCGTAACAATAGATATTGC
CATAAATAATGTCACTGTCATTTTTTTAATACCGATCTTGATAGTGGGAACCCAAGACAT
ATAAAATATTACCAGATGGATTTTTTATGTTCAAAGAAGAAGAAAGCAGAACTTCAGATG
CT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.5235
               

               
               236-327, - strand, RNAz p=0.801686

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.5235
               

               
               236-327, - strand, RNAz p=0.801686

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-722, gnl|bosTau2|chr3 (59240215-59239500)
               

               
               1-722, gnl|canFam2|chr5 (55498800-55498329)
               

               
               1-722, gnl|dasNov1|scaffold_1432 (56212-56653)
               

               
               1-722, gnl|hg17|chr1 (57184754-57185224)
               

               
               1-722, gnl|Hg17|chr1 (57185485-57184770)
               

               
               1-722, gnl|loxAfr1|scaffold_62544 (9169-8697)
               

               
               1-722, gnl|mm7|chr4 (104112839-104112261)
               

               
               1-722, gnl|Mm7|chr4 (104112005-104112821)
               

               
               1-722, gnl|monDom2|scaffold_40 (18623627-18623158)
               

               
               1-722, gnl|panTro1|chr1 (55527609-55528079)
               

               
               1-722, gnl|rheMac2|chr1 (59874591-59875058)
               

               
               1-722, gnl|rn3|chr5 (125703936-125703441)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-722, gnl|bosTau2|chr3 (59240215-59239500)
               

               
               1-722, gnl|canFam2|chr5 (55498800-55498329)
               

               
               1-722, gnl|dasNov1|scaffold_1432 (56212-56653)
               

               
               1-722, gnl|hg17|chr1 (57184754-57185224)
               

               
               1-722, gnl|Hg17|chr1 (57185485-57184770)
               

               
               1-722, gnl|loxAfr1|scaffold_62544 (9169-8697)
               

               
               1-722, gnl|mm7|chr4 (104112839-104112261)
               

               
               1-722, gnl|Mm7|chr4 (104112005-104112821)
               

               
               1-722, gnl|monDom2|scaffold_40 (18623627-18623158)
               

               
               1-722, gnl|panTro1|chr1 (55527609-55528079)
               

               
               1-722, gnl|rheMac2|chr1 (59874591-59875058)
               

               
               1-722, gnl|rn3|chr5 (125703936-125703441)

	1-119, - strand, RNAz p=0.5235
	236-327, - strand, RNAz p=0.801686

	1-722, gnl\|bosTau2\|chr3 (59240215-59239500)
	1-722, gnl\|canFam2\|chr5 (55498800-55498329)
	1-722, gnl\|dasNov1\|scaffold_1432 (56212-56653)
	1-722, gnl\|hg17\|chr1 (57184754-57185224)
	1-722, gnl\|Hg17\|chr1 (57185485-57184770)
	1-722, gnl\|loxAfr1\|scaffold_62544 (9169-8697)
	1-722, gnl\|mm7\|chr4 (104112839-104112261)
	1-722, gnl\|Mm7\|chr4 (104112005-104112821)
	1-722, gnl\|monDom2\|scaffold_40 (18623627-18623158)
	1-722, gnl\|panTro1\|chr1 (55527609-55528079)
	1-722, gnl\|rheMac2\|chr1 (59874591-59875058)
	1-722, gnl\|rn3\|chr5 (125703936-125703441)