Non-Coding RNA Search

Liv1-LVRM10139A01

Sequence:


               
               TCAAATTATGGGGCCCTGGGAGGGGTCAGGGCAGGGCCAGGCCGCCATCGCTGTGGGTGC
AGCAGAGGAAGCAGCTGCTCGTGAGTTTCATAAACACGTAGTGGAGCCTTTCCTGGTTTT
CCTCCTGCGGGGGGTGTGGTGCAGACAGCACTCGCTCTTTTGTGCCGCTGTCTTCCTCCA
GGATGTAGGGAAGGGCGAGGGTGTTCTTTGTCTCTGCCCCAGTGAAGTGACCTTGGGAGA
AGAGATGGGCTAGAATGTGAATGGAAGGAAGGTTCAGTGATGACAGTTCCCCACAAGGGA
AACTGAGGCACAGAGAGAGGCTGGGACACACCCAGAGACATGCAGTGGCAGCGTACAAAC
CAGATCCGGGCTCCCTTGATCCCGTCTCAAAGACTAAACTAGTGAACCCCAAACATGTGT
GGTCCATGCCATGCATTTGTGAGATCTCCTTCTCCAACAGGAGATCCCCATTCTTCCCCT
TGGAGTCACCCCACTGCTGCCTAGGCACAGGGGGATGGACGAAATGACCTCCCGAGTCCC
TTCTGGCCCTGCGGAAGCCTAATTCTGCCCAGGAGCCTGGAGGCTGACCTTGCCACCCTG
GCTGCCATTCTCAGGTGGGTGGGGGGTGCCAGGAATGTGGGTGTGGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAATTATGGGGCCCTGGGAGGGGTCAGGGCAGGGCCAGGCCGCCATCGCTGTGGGTGC
AGCAGAGGAAGCAGCTGCTCGTGAGTTTCATAAACACGTAGTGGAGCCTTTCCTGGTTTT
CCTCCTGCGGGGGGTGTGGTGCAGACAGCACTCGCTCTTTTGTGCCGCTGTCTTCCTCCA
GGATGTAGGGAAGGGCGAGGGTGTTCTTTGTCTCTGCCCCAGTGAAGTGACCTTGGGAGA
AGAGATGGGCTAGAATGTGAATGGAAGGAAGGTTCAGTGATGACAGTTCCCCACAAGGGA
AACTGAGGCACAGAGAGAGGCTGGGACACACCCAGAGACATGCAGTGGCAGCGTACAAAC
CAGATCCGGGCTCCCTTGATCCCGTCTCAAAGACTAAACTAGTGAACCCCAAACATGTGT
GGTCCATGCCATGCATTTGTGAGATCTCCTTCTCCAACAGGAGATCCCCATTCTTCCCCT
TGGAGTCACCCCACTGCTGCCTAGGCACAGGGGGATGGACGAAATGACCTCCCGAGTCCC
TTCTGGCCCTGCGGAAGCCTAATTCTGCCCAGGAGCCTGGAGGCTGACCTTGCCACCCTG
GCTGCCATTCTCAGGTGGGTGGGGGGTGCCAGGAATGTGGGTGTGGGAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               158-274, - strand, RNAz p=0.860352
               

               
               434-547, - strand, RNAz p=0.790527

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-274, - strand, RNAz p=0.860352
               

               
               434-547, - strand, RNAz p=0.790527

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-649, gnl|bosTau2|chr7 (32571882-32572531)
               

               
               2-649, gnl|canFam2|chr5 (56000249-55999678)
               

               
               2-649, gnl|dasNov1|scaffold_935 (136410-135843)
               

               
               2-649, gnl|echTel1|scaffold_276132 (95715-95090)
               

               
               2-649, gnl|hg17|chr1 (56683641-56684211)
               

               
               2-649, gnl|Hg17|chr1 (56684306-56683656)
               

               
               2-649, gnl|loxAfr1|scaffold_3625 (6714-7303)
               

               
               2-649, gnl|mm7|chr4 (104601044-104600509)
               

               
               2-649, gnl|Mm7|chr4 (104600411-104601028)
               

               
               2-649, gnl|oryCun1|scaffold_213500 (165183-164645)
               

               
               2-649, gnl|panTro1|chr1 (55023824-55024393)
               

               
               2-649, gnl|rheMac2|chr1 (59373463-59374033)
               

               
               2-649, gnl|rn3|chr5 (126193387-126192838)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-649, gnl|bosTau2|chr7 (32571882-32572531)
               

               
               2-649, gnl|canFam2|chr5 (56000249-55999678)
               

               
               2-649, gnl|dasNov1|scaffold_935 (136410-135843)
               

               
               2-649, gnl|echTel1|scaffold_276132 (95715-95090)
               

               
               2-649, gnl|hg17|chr1 (56683641-56684211)
               

               
               2-649, gnl|Hg17|chr1 (56684306-56683656)
               

               
               2-649, gnl|loxAfr1|scaffold_3625 (6714-7303)
               

               
               2-649, gnl|mm7|chr4 (104601044-104600509)
               

               
               2-649, gnl|Mm7|chr4 (104600411-104601028)
               

               
               2-649, gnl|oryCun1|scaffold_213500 (165183-164645)
               

               
               2-649, gnl|panTro1|chr1 (55023824-55024393)
               

               
               2-649, gnl|rheMac2|chr1 (59373463-59374033)
               

               
               2-649, gnl|rn3|chr5 (126193387-126192838)

	158-274, - strand, RNAz p=0.860352
	434-547, - strand, RNAz p=0.790527

	2-649, gnl\|bosTau2\|chr7 (32571882-32572531)
	2-649, gnl\|canFam2\|chr5 (56000249-55999678)
	2-649, gnl\|dasNov1\|scaffold_935 (136410-135843)
	2-649, gnl\|echTel1\|scaffold_276132 (95715-95090)
	2-649, gnl\|hg17\|chr1 (56683641-56684211)
	2-649, gnl\|Hg17\|chr1 (56684306-56683656)
	2-649, gnl\|loxAfr1\|scaffold_3625 (6714-7303)
	2-649, gnl\|mm7\|chr4 (104601044-104600509)
	2-649, gnl\|Mm7\|chr4 (104600411-104601028)
	2-649, gnl\|oryCun1\|scaffold_213500 (165183-164645)
	2-649, gnl\|panTro1\|chr1 (55023824-55024393)
	2-649, gnl\|rheMac2\|chr1 (59373463-59374033)
	2-649, gnl\|rn3\|chr5 (126193387-126192838)