Non-Coding RNA Search

Liv1-LVRM10157C09

Sequence:


               
               GGAAACAAGTGTTAGAGGAGCCTGAAAATGAGGCATTCACATGTAAATATCTTTGAGAAT
TCTCAGAGGACGTAAGTAGCATTAAAAATGGTTCCTGTTGATTCTGTTTGATTCTTTAAT
AAGTGCCAGTGATGCCTTAGATTCTGAAGGTGTATGTGACTGTTCTTTAAAACACATAAC
AACGTGTAATTGCCGAGTCGTGGTCTCACTACCCTTTTAATATTTACCAATTAGTCCAAG
TTTATAATAATAATGTAAAAAGATCTCCTCTGTAACGCTTTTAAAAGTTATATCATTTTG
AAAGTTGCAGACTGGAACCTTTTGCACCGATAATGACTTTGGGACTCTTGACATTTAGCT
GGATGACTGATCCCAGTGTATAGCTGCCAAGTAAAGGGAAGACGTTGAGGGCTGTGATGT
GTAGAATTGCTTTGACTCAGCCCGGTCCCCTGGCAGCCGTTGCAGTCTGGTGGCAGCAGC
ACCAGATCTGTGCACTTGCACATTTGAAAGCTGCTTTTCTTAGGCTTCCACAGCAGTTTG
TATAGAGGAGGAGCCAAAGTAAGATGTCGACAGAGACTTTCTCAAAAGCAATTCACATGT
AAGCTACAAAGAACCTCTTTTAGATTTGGTCCTATCACTGCAGACTCCTTGGACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACAAGTGTTAGAGGAGCCTGAAAATGAGGCATTCACATGTAAATATCTTTGAGAAT
TCTCAGAGGACGTAAGTAGCATTAAAAATGGTTCCTGTTGATTCTGTTTGATTCTTTAAT
AAGTGCCAGTGATGCCTTAGATTCTGAAGGTGTATGTGACTGTTCTTTAAAACACATAAC
AACGTGTAATTGCCGAGTCGTGGTCTCACTACCCTTTTAATATTTACCAATTAGTCCAAG
TTTATAATAATAATGTAAAAAGATCTCCTCTGTAACGCTTTTAAAAGTTATATCATTTTG
AAAGTTGCAGACTGGAACCTTTTGCACCGATAATGACTTTGGGACTCTTGACATTTAGCT
GGATGACTGATCCCAGTGTATAGCTGCCAAGTAAAGGGAAGACGTTGAGGGCTGTGATGT
GTAGAATTGCTTTGACTCAGCCCGGTCCCCTGGCAGCCGTTGCAGTCTGGTGGCAGCAGC
ACCAGATCTGTGCACTTGCACATTTGAAAGCTGCTTTTCTTAGGCTTCCACAGCAGTTTG
TATAGAGGAGGAGCCAAAGTAAGATGTCGACAGAGACTTTCTCAAAAGCAATTCACATGT
AAGCTACAAAGAACCTCTTTTAGATTTGGTCCTATCACTGCAGACTCCTTGGACTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               475-594, - strand, RNAz p=0.590793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-594, - strand, RNAz p=0.590793

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-658, gnl|bosTau2|chr1 (25838698-25838037)
               

               
               1-658, gnl|Hg17|chr3 (108875682-108876332)
               

               
               1-658, gnl|Mm7|chr16 (50071962-50071321)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-658, gnl|bosTau2|chr1 (25838698-25838037)
               

               
               1-658, gnl|Hg17|chr3 (108875682-108876332)
               

               
               1-658, gnl|Mm7|chr16 (50071962-50071321)

	1-658, gnl\|bosTau2\|chr1 (25838698-25838037)
	1-658, gnl\|Hg17\|chr3 (108875682-108876332)
	1-658, gnl\|Mm7\|chr16 (50071962-50071321)