Liv1-LVRM1A060195
|
AAAACCAATGCTGATTTCTGAGTTCTGGAACTGAATGACCAACTTGTATGTTTTTGTTAA
CATGGGAGATTTGTCTTAACCACATTGTGGTCATTGGGTGGTAGAAAAGAGAGAGAAAGT
CAAGATAATCACACAACCCCACCTTCAGTGGGCAGCTGTCATCACACAATGTCTGAAGGC
CTGTAGTGAGCAAGCTGGCCAGGGTGGGGCAGGTGCTTCTCTTCCTCATGTTTCTTGATG
GTGGCTCATTTCCGTAAACGTAAAAAACAAAAAAAAAAAATTATGTTGGCAATTCCATCT
ATCATTGACTCATTAAATGTCCTTACCTTATTTCAGAATATTCATTCTTGCCTAACTTTC
ATTAATTTTTGATTTCTGGCATAGATTCCTGGATCACTACAATTTATACTTTTTCATCTA
GAAAAGGGTATTTTTATTCTCACTCCTTATTTTGGATCTCAAAGCCAGTTCCTTACAATT
ACTTCCTGCAAGTACAATAGTGGCTCACTTAGAAAATGGGCTTTGTTATGGACATTTGGA
AAACTTTAATAGTTTATGTCTGCTTATTTCCCTTTATCCTGGAACACCCCTCCTCCAAGA
GTAGATTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAACCAATGCTGATTTCTGAGTTCTGGAACTGAATGACCAACTTGTATGTTTTTGTTAA
CATGGGAGATTTGTCTTAACCACATTGTGGTCATTGGGTGGTAGAAAAGAGAGAGAAAGT
CAAGATAATCACACAACCCCACCTTCAGTGGGCAGCTGTCATCACACAATGTCTGAAGGC
CTGTAGTGAGCAAGCTGGCCAGGGTGGGGCAGGTGCTTCTCTTCCTCATGTTTCTTGATG
GTGGCTCATTTCCGTAAACGTAAAAAACAAAAAAAAAAAATTATGTTGGCAATTCCATCT
ATCATTGACTCATTAAATGTCCTTACCTTATTTCAGAATATTCATTCTTGCCTAACTTTC
ATTAATTTTTGATTTCTGGCATAGATTCCTGGATCACTACAATTTATACTTTTTCATCTA
GAAAAGGGTATTTTTATTCTCACTCCTTATTTTGGATCTCAAAGCCAGTTCCTTACAATT
ACTTCCTGCAAGTACAATAGTGGCTCACTTAGAAAATGGGCTTTGTTATGGACATTTGGA
AAACTTTAATAGTTTATGTCTGCTTATTTCCCTTTATCCTGGAACACCCCTCCTCCAAGA
GTAGATTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
7-261, gnl|bosTau2|chr5 (47375816-47375558) |
|
7-261, gnl|canFam2|chr27 (19463273-19462819) |
|
7-261, gnl|echTel1|scaffold_320935 (5574-6045) |
|
7-261, gnl|hg17|chr12 (32474919-32475395) |
|
7-261, gnl|Hg17|chr12 (32475221-32475469) |
|
7-261, gnl|loxAfr1|scaffold_7041 (7004-6524) |
|
7-261, gnl|oryCun1|scaffold_51239 (1091-1507) |
|
7-261, gnl|panTro1|chrUn_random (34585225-34584749) |
|
7-261, gnl|rheMac2|chr11 (32507684-32508155) |
| |
|
294-609, gnl|bosTau2|chr5 (47375558-47375253) |
|
294-609, gnl|canFam2|chr27 (19462779-19462479) |
|
294-609, gnl|echTel1|scaffold_320935 (6089-6472) |
|
294-609, gnl|hg17|chr12 (32475438-32475775) |
|
294-609, gnl|Hg17|chr12 (32475469-32475984) |
|
294-609, gnl|loxAfr1|scaffold_7041 (6481-6150) |
|
294-609, gnl|oryCun1|scaffold_51239 (1814-2114) |
|
294-609, gnl|panTro1|chrUn_random (34584706-34584372) |
|
294-609, gnl|rheMac2|chr11 (32508198-32508531) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-261, gnl|bosTau2|chr5 (47375816-47375558) |
|
7-261, gnl|canFam2|chr27 (19463273-19462819) |
|
7-261, gnl|echTel1|scaffold_320935 (5574-6045) |
|
7-261, gnl|hg17|chr12 (32474919-32475395) |
|
7-261, gnl|Hg17|chr12 (32475221-32475469) |
|
7-261, gnl|loxAfr1|scaffold_7041 (7004-6524) |
|
7-261, gnl|oryCun1|scaffold_51239 (1091-1507) |
|
7-261, gnl|panTro1|chrUn_random (34585225-34584749) |
|
7-261, gnl|rheMac2|chr11 (32507684-32508155) |
| |
|
294-609, gnl|bosTau2|chr5 (47375558-47375253) |
|
294-609, gnl|canFam2|chr27 (19462779-19462479) |
|
294-609, gnl|echTel1|scaffold_320935 (6089-6472) |
|
294-609, gnl|hg17|chr12 (32475438-32475775) |
|
294-609, gnl|Hg17|chr12 (32475469-32475984) |
|
294-609, gnl|loxAfr1|scaffold_7041 (6481-6150) |
|
294-609, gnl|oryCun1|scaffold_51239 (1814-2114) |
|
294-609, gnl|panTro1|chrUn_random (34584706-34584372) |
|
294-609, gnl|rheMac2|chr11 (32508198-32508531) |
