Non-Coding RNA Search

Liv1-LVRM1A070199

Sequence:


               
               ATTTACTTATTTTTGATCATTCTGAGAGAAGTGAGTCTTGGCCACCAGACCCAATAAACC
AAACATCCCTCCCATGGAGAATTGTGCTGGTTCTTGAGGACCTGGAGGGCCTGCCGCCCC
AGGGGAATGAGCCAGAAGCAGGCCTGCTTTTCTGCTCAGGACAGAGTGGTTTCCTTGAAC
ACATCTTTCATTATGATTCACACCAGCTTGAAGAAAAAATTCAGCTGCTGCCTGCTGGTC
TTTCTCCTGTTTGCGATCATTTGTGTGTGGGAGGAAAAGAAGAAAGGGAGTTACTATGAA
TCCCTTAAATTGCAAACCAAGGAGCTCCAGGTGCTGAGGAGTCTGGAGAAACTGACTCCA
GGGTCTGGCTCCCAGTCTGCATCCTCCAGCGGCACCCAGAACGCCCAAAGAGGCAGCCAG
GCCCTCGGCAGTCCCAGTAGCCCAGCCAAGGCCAAGCCAGAGGCCAGCTTCCAGGTGTGG
AACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTAC
CTGAGCATGAACAAGTATAAAGTGTCCTACAAGGGGCCAGGGCCCGGTGTTAAGTACAGT
GCTGAGGCCCTGCTTTGCCACCTCCGGGACAACGTGAACGTTTCCATGGTAGAAGCCACA
GATTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTACTTATTTTTGATCATTCTGAGAGAAGTGAGTCTTGGCCACCAGACCCAATAAACC
AAACATCCCTCCCATGGAGAATTGTGCTGGTTCTTGAGGACCTGGAGGGCCTGCCGCCCC
AGGGGAATGAGCCAGAAGCAGGCCTGCTTTTCTGCTCAGGACAGAGTGGTTTCCTTGAAC
ACATCTTTCATTATGATTCACACCAGCTTGAAGAAAAAATTCAGCTGCTGCCTGCTGGTC
TTTCTCCTGTTTGCGATCATTTGTGTGTGGGAGGAAAAGAAGAAAGGGAGTTACTATGAA
TCCCTTAAATTGCAAACCAAGGAGCTCCAGGTGCTGAGGAGTCTGGAGAAACTGACTCCA
GGGTCTGGCTCCCAGTCTGCATCCTCCAGCGGCACCCAGAACGCCCAAAGAGGCAGCCAG
GCCCTCGGCAGTCCCAGTAGCCCAGCCAAGGCCAAGCCAGAGGCCAGCTTCCAGGTGTGG
AACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTAC
CTGAGCATGAACAAGTATAAAGTGTCCTACAAGGGGCCAGGGCCCGGTGTTAAGTACAGT
GCTGAGGCCCTGCTTTGCCACCTCCGGGACAACGTGAACGTTTCCATGGTAGAAGCCACA
GATTTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9XSG8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9XSG8_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-535, - strand, RNAz p=0.989325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-535, - strand, RNAz p=0.989325

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               140-668, gnl|bosTau2|chr1 (51373172-51372653)
               

               
               140-668, gnl|Hg17|chr3 (188243142-188243669)
               

               
               140-668, gnl|Mm7|chr16 (22979653-22980169)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-668, gnl|bosTau2|chr1 (51373172-51372653)
               

               
               140-668, gnl|Hg17|chr3 (188243142-188243669)
               

               
               140-668, gnl|Mm7|chr16 (22979653-22980169)

	140-668, gnl\|bosTau2\|chr1 (51373172-51372653)
	140-668, gnl\|Hg17\|chr3 (188243142-188243669)
	140-668, gnl\|Mm7\|chr16 (22979653-22980169)