Non-Coding RNA Search

Liv1-LVRM1B030187

Sequence:


               
               TTcgacctatagcacagctcatggcaatgccaaatccttaacccactgagcgaggccagg
ggtcgaaccctcaacctcatggttcctagctggatttgtttccgctgtgccatgatggga
acATGCCTTTCTTGCTTTATGGAAATAAAATGCCATGCTCTTAACACCGTTCTAGGTTTA
TCAGACATGAAGGGGCTCCTCCCAGGGCATCGTAGATGGGTATCTCCTATGGTTCTCCAG
GAGTGCCAGGACCACAAAGTTCTGAGCACTTTGATCTGCTGTTCCTGGGGCATCTGAGCC
AGCGAGAGACGATTCCAGGTCCATCATGCCTGGAAAAGTAATGAGACCTCAATCTTCCTT
CCCTTTGAAGAGGTCTGATGTCTCCACTCATATTTGTCTTTCAAAGGCTGTTTTCACAGT
GGCGTCGTCCGGGCCGAAGGGGACGTGTTTTCACCTCCCAACCAGAACTGTACCATCTGT
GTCTGCCTGGTGAGCATCATGAGATCCCCGAAGCGTTGCGAGTGTTTTCTTAACCTTTGG
GGGTTTTAGAGGAAGTGGGGGAGACCGGATGTTAAAGATGAGCTTGTGGAAGGGAGGAAG
AGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTcgacctatagcacagctcatggcaatgccaaatccttaacccactgagcgaggccagg
ggtcgaaccctcaacctcatggttcctagctggatttgtttccgctgtgccatgatggga
acATGCCTTTCTTGCTTTATGGAAATAAAATGCCATGCTCTTAACACCGTTCTAGGTTTA
TCAGACATGAAGGGGCTCCTCCCAGGGCATCGTAGATGGGTATCTCCTATGGTTCTCCAG
GAGTGCCAGGACCACAAAGTTCTGAGCACTTTGATCTGCTGTTCCTGGGGCATCTGAGCC
AGCGAGAGACGATTCCAGGTCCATCATGCCTGGAAAAGTAATGAGACCTCAATCTTCCTT
CCCTTTGAAGAGGTCTGATGTCTCCACTCATATTTGTCTTTCAAAGGCTGTTTTCACAGT
GGCGTCGTCCGGGCCGAAGGGGACGTGTTTTCACCTCCCAACCAGAACTGTACCATCTGT
GTCTGCCTGGTGAGCATCATGAGATCCCCGAAGCGTTGCGAGTGTTTTCTTAACCTTTGG
GGGTTTTAGAGGAAGTGGGGGAGACCGGATGTTAAAGATGAGCTTGTGGAAGGGAGGAAG
AGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               361-479, - strand, RNAz p=0.532958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-479, - strand, RNAz p=0.532958

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-605, gnl|bosTau2|chr29 (30857112-30856635)
               

               
               124-605, gnl|Hg17|chr11 (60802787-60802325)
               

               
               124-605, gnl|Mm7|chr19 (10328280-10328738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-605, gnl|bosTau2|chr29 (30857112-30856635)
               

               
               124-605, gnl|Hg17|chr11 (60802787-60802325)
               

               
               124-605, gnl|Mm7|chr19 (10328280-10328738)

	124-605, gnl\|bosTau2\|chr29 (30857112-30856635)
	124-605, gnl\|Hg17\|chr11 (60802787-60802325)
	124-605, gnl\|Mm7\|chr19 (10328280-10328738)