Non-Coding RNA Search

Liv1-LVRM1B080179

Sequence:


               
               TGATTTACCCAAGGTTATAGAGCCAGTTCAGTTGCTTCCAGAAACTCAGACTTTCTCCCA
GCGAGGATCCGTGTAGGATCCTCAGAGCCTGAGACCAAGAACATGTATGTAAACCATGCA
TCATTCTAGAACTGTCAGGATGGGGGCAGAATCCCAGCCCAGCGCCTGGGAGCAGCTTTG
CCTTAGGGATCTGCTATGTTTATCTAAGGTGGTGGTTCTCGGAGTGTGGTCTGGGGACGC
CAGGAATCCACAGGAtcaaaattattttcataataataaagtcttatttgccttttcctt
cattttctcacaagtgtccaggggagttctccagaggccatgtgacatgcgggcccagta
tcactctgatggctgatgggatgggagcttgtgtattcagagcttctgctgctcttttaa
cgctctgttttaatgtcggatacagtaattagtgatagaacaacacctataaacaaaagc
tctttgggggcctcagtcatttgtaagagtacagaaggggtcctgagaccaaggcgcttg
agagccgctATTCCAAGGTGCCAGGCCCAGCAAAGGGGAAAATCAGTGGCTTGCAGCCNA
ACTCAGCCTCAGGGGAGGAAAGAAGAGAGAAACAGCCCTTTCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTTACCCAAGGTTATAGAGCCAGTTCAGTTGCTTCCAGAAACTCAGACTTTCTCCCA
GCGAGGATCCGTGTAGGATCCTCAGAGCCTGAGACCAAGAACATGTATGTAAACCATGCA
TCATTCTAGAACTGTCAGGATGGGGGCAGAATCCCAGCCCAGCGCCTGGGAGCAGCTTTG
CCTTAGGGATCTGCTATGTTTATCTAAGGTGGTGGTTCTCGGAGTGTGGTCTGGGGACGC
CAGGAATCCACAGGAtcaaaattattttcataataataaagtcttatttgccttttcctt
cattttctcacaagtgtccaggggagttctccagaggccatgtgacatgcgggcccagta
tcactctgatggctgatgggatgggagcttgtgtattcagagcttctgctgctcttttaa
cgctctgttttaatgtcggatacagtaattagtgatagaacaacacctataaacaaaagc
tctttgggggcctcagtcatttgtaagagtacagaaggggtcctgagaccaaggcgcttg
agagccgctATTCCAAGGTGCCAGGCCCAGCAAAGGGGAAAATCAGTGGCTTGCAGCCNA
ACTCAGCCTCAGGGGAGGAAAGAAGAGAGAAACAGCCCTTTCTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-141, - strand, RNAz p=0.67694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-141, - strand, RNAz p=0.67694

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-641, gnl|bosTau2|chr15 (39119141-39118517)
               

               
               1-641, gnl|Hg17|chr11 (34157773-34156686)
               

               
               1-641, gnl|Mm7|chr2 (103547660-103548964)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-641, gnl|bosTau2|chr15 (39119141-39118517)
               

               
               1-641, gnl|Hg17|chr11 (34157773-34156686)
               

               
               1-641, gnl|Mm7|chr2 (103547660-103548964)

	1-641, gnl\|bosTau2\|chr15 (39119141-39118517)
	1-641, gnl\|Hg17\|chr11 (34157773-34156686)
	1-641, gnl\|Mm7\|chr2 (103547660-103548964)