Non-Coding RNA Search

Liv1-LVRM1B120164

Sequence:


               
               CTGGTGGCCTGACCCCCGGTCCTGTGACCTGCTCCTCCTCGTGTAGGGTTCCCCACTGAA
GGACTCGGCCCGGCTGTTTGGCAAGGAGGAGAGACAGAAGCTCTGGCCCGCCTGGATAAG
CACCTGGAACGGAAGGTATGGCCCCTTTTCTGAGACGCAGAACTTCAGATGCGGACACCA
TGCAGTAGGGGCGATGGAGCCAGGTTCATGTCCCTTAGTGACTCTTTGCTCAAGCTGGTT
AGAAAATGAAAAATCTTCCTTATGGCAGTAATGCCAGCAGTAATAGTAGCTACCATTTAG
TGAGCGTGGTCACTGGGCTGAGCAGTTCTGGGTTAAGCACCTGCTTGTACTGTTTCCTTT
CACCTCGCCAACAGCCCTACAGGTAGGTATTAAGCTCTAAAACGTATGCTAGATTGCTCT
TCTTTCATCTGTGTGTCCCTTTTCAAGAGAATATCTGGTCAGTGAAGTCCATCAGGTTGA
TTATTTTGTGTTTATGTGTCCCCCACCATTTGTTGGGTCTCCATTTGCGTAGCACAGGGA
ATGGATGGCCCACCTCCCAGTGAAGTGGGAATTGGTAAGAGGAAAGAAAGAAGCCAAGGC
CCCAGAGGTAGTCCTCACTGTGTCGAATGCCTCCACTGCCCCAGGGCTGGAGGAGCAGAG
AACAGTCAGCTCCTACTTCCTGCCCCCTGCAGCTAGTTTATAGGCTGGGTCCCTAAATTA
CAACTTGTTTTAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGGCCTGACCCCCGGTCCTGTGACCTGCTCCTCCTCGTGTAGGGTTCCCCACTGAA
GGACTCGGCCCGGCTGTTTGGCAAGGAGGAGAGACAGAAGCTCTGGCCCGCCTGGATAAG
CACCTGGAACGGAAGGTATGGCCCCTTTTCTGAGACGCAGAACTTCAGATGCGGACACCA
TGCAGTAGGGGCGATGGAGCCAGGTTCATGTCCCTTAGTGACTCTTTGCTCAAGCTGGTT
AGAAAATGAAAAATCTTCCTTATGGCAGTAATGCCAGCAGTAATAGTAGCTACCATTTAG
TGAGCGTGGTCACTGGGCTGAGCAGTTCTGGGTTAAGCACCTGCTTGTACTGTTTCCTTT
CACCTCGCCAACAGCCCTACAGGTAGGTATTAAGCTCTAAAACGTATGCTAGATTGCTCT
TCTTTCATCTGTGTGTCCCTTTTCAAGAGAATATCTGGTCAGTGAAGTCCATCAGGTTGA
TTATTTTGTGTTTATGTGTCCCCCACCATTTGTTGGGTCTCCATTTGCGTAGCACAGGGA
ATGGATGGCCCACCTCCCAGTGAAGTGGGAATTGGTAAGAGGAAAGAAAGAAGCCAAGGC
CCCAGAGGTAGTCCTCACTGTGTCGAATGCCTCCACTGCCCCAGGGCTGGAGGAGCAGAG
AACAGTCAGCTCCTACTTCCTGCCCCCTGCAGCTAGTTTATAGGCTGGGTCCCTAAATTA
CAACTTGTTTTAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               598-693, - strand, RNAz p=0.838651

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               598-693, - strand, RNAz p=0.838651

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               647-756, - strand, RNAmicro p=0.999888
               

               
               646-706, + strand, RNAmicro p=0.966072

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               647-756, - strand, RNAmicro p=0.999888
               

               
               646-706, + strand, RNAmicro p=0.966072

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-352, gnl|bosTau2|chr15 (47685595-47685946)
               

               
               5-352, gnl|Hg17|chr11 (45840147-45840509)
               

               
               5-352, gnl|Mm7|chr2 (92273008-92272712)
               


               
               520-735, gnl|bosTau2|chr15 (47686376-47686605)
               

               
               520-735, gnl|Hg17|chr11 (45840888-45841097)
               

               
               520-735, gnl|Mm7|chr2 (92272299-92272075)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-352, gnl|bosTau2|chr15 (47685595-47685946)
               

               
               5-352, gnl|Hg17|chr11 (45840147-45840509)
               

               
               5-352, gnl|Mm7|chr2 (92273008-92272712)
               


               
               520-735, gnl|bosTau2|chr15 (47686376-47686605)
               

               
               520-735, gnl|Hg17|chr11 (45840888-45841097)
               

               
               520-735, gnl|Mm7|chr2 (92272299-92272075)

	647-756, - strand, RNAmicro p=0.999888
	646-706, + strand, RNAmicro p=0.966072

	5-352, gnl\|bosTau2\|chr15 (47685595-47685946)
	5-352, gnl\|Hg17\|chr11 (45840147-45840509)
	5-352, gnl\|Mm7\|chr2 (92273008-92272712)

	520-735, gnl\|bosTau2\|chr15 (47686376-47686605)
	520-735, gnl\|Hg17\|chr11 (45840888-45841097)
	520-735, gnl\|Mm7\|chr2 (92272299-92272075)