Non-Coding RNA Search

Liv1-LVRM1C010003

Sequence:


               
               AGCCGTCGCTTGGGTGACTTGCTGGCTGGAGTTGGGATGGAGTCGGAGTGGGATGCGCTG
AGAGTGCTGGGAGCAGTTACCGCCCTGTGCCTGCTGCTGTGGGTGATCTGGGGGGTGGGC
AGCACGGTGTATATTTACCTGCTGCCCCAGGTGCGCCGGGGCAACGCCTGGCTCCGATCG
CACGGAGCCTGGGCAGTGGTGACAGGAGCCACTAGTGGCATCGGCAAGGCCTATGCACAT
GAGCTCGCCCGCAGAGGTCTGAACATCGTCCTTATCAGCCGGGATCTGAACAAGTTAGAG
CGCGAGGCAAAGGAGATAGAGCGGCTTCATGGGAAAAGCACACGAGTCGTCCAGGTGGAT
TTCACCGGGGGCTTGGAGATCTACGAGGCCATTGAGGCAGGACTGAAGGACCTGGAGATC
GGAGTACTGGTGAACAATGTGGGCAGATCGTACACACGTGACCTGAGGAAACTGCTGGAC
TGTGAGGACATCGGCAAAAAAATCTTGGATGTTATAAACTGCAACATGCTGTCTGTGGCC
CAGATGACTCGAATCGTCCTGCCCCAGATGGTTGCCAGGGCCAAAGGCATCATCATCAAC
ATCTCTTCATCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGTCGCTTGGGTGACTTGCTGGCTGGAGTTGGGATGGAGTCGGAGTGGGATGCGCTG
AGAGTGCTGGGAGCAGTTACCGCCCTGTGCCTGCTGCTGTGGGTGATCTGGGGGGTGGGC
AGCACGGTGTATATTTACCTGCTGCCCCAGGTGCGCCGGGGCAACGCCTGGCTCCGATCG
CACGGAGCCTGGGCAGTGGTGACAGGAGCCACTAGTGGCATCGGCAAGGCCTATGCACAT
GAGCTCGCCCGCAGAGGTCTGAACATCGTCCTTATCAGCCGGGATCTGAACAAGTTAGAG
CGCGAGGCAAAGGAGATAGAGCGGCTTCATGGGAAAAGCACACGAGTCGTCCAGGTGGAT
TTCACCGGGGGCTTGGAGATCTACGAGGCCATTGAGGCAGGACTGAAGGACCTGGAGATC
GGAGTACTGGTGAACAATGTGGGCAGATCGTACACACGTGACCTGAGGAAACTGCTGGAC
TGTGAGGACATCGGCAAAAAAATCTTGGATGTTATAAACTGCAACATGCTGTCTGTGGCC
CAGATGACTCGAATCGTCCTGCCCCAGATGGTTGCCAGGGCCAAAGGCATCATCATCAAC
ATCTCTTCATCAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869848|ref|XP_586787.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869848|ref|XP_586787.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-196, + strand, RNAz p=0.966644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, + strand, RNAz p=0.966644

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               12-196, gnl|bosTau2|chr18 (38652016-38651832)
               


               
               318-430, gnl|bosTau2|chr18 (38647462-38647350)
               

               
               318-430, gnl|canFam2|chr1 (113206543-113205873)
               

               
               318-430, gnl|dasNov1|scaffold_97635 (1658-2366)
               

               
               318-430, gnl|echTel1|scaffold_236569 (4064-4740)
               

               
               318-430, gnl|hg17|chr19 (50382113-50382835)
               

               
               318-430, gnl|Hg17|chr19 (50382427-50382539)
               

               
               318-430, gnl|oryCun1|scaffold_83237 (6904-7515)
               

               
               318-430, gnl|panTro1|chr20 (47523933-47524655)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-196, gnl|bosTau2|chr18 (38652016-38651832)
               


               
               318-430, gnl|bosTau2|chr18 (38647462-38647350)
               

               
               318-430, gnl|canFam2|chr1 (113206543-113205873)
               

               
               318-430, gnl|dasNov1|scaffold_97635 (1658-2366)
               

               
               318-430, gnl|echTel1|scaffold_236569 (4064-4740)
               

               
               318-430, gnl|hg17|chr19 (50382113-50382835)
               

               
               318-430, gnl|Hg17|chr19 (50382427-50382539)
               

               
               318-430, gnl|oryCun1|scaffold_83237 (6904-7515)
               

               
               318-430, gnl|panTro1|chr20 (47523933-47524655)

	12-196, gnl\|bosTau2\|chr18 (38652016-38651832)

	318-430, gnl\|bosTau2\|chr18 (38647462-38647350)
	318-430, gnl\|canFam2\|chr1 (113206543-113205873)
	318-430, gnl\|dasNov1\|scaffold_97635 (1658-2366)
	318-430, gnl\|echTel1\|scaffold_236569 (4064-4740)
	318-430, gnl\|hg17\|chr19 (50382113-50382835)
	318-430, gnl\|Hg17\|chr19 (50382427-50382539)
	318-430, gnl\|oryCun1\|scaffold_83237 (6904-7515)
	318-430, gnl\|panTro1\|chr20 (47523933-47524655)