Liv1-LVRM1D060082
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ATTGGGAGCGAGAGCGAGGCTGCGGAGCAGACGAGAGGGGACGGCGGGAGCTAGAGAGGG
CGCAGCGCTAGGGTGGCCGTGCCAGGGGAGCGGCTGCCCGGGCCCGGGCCCGGGCCGTGC
GAGACGGCGGAGGCAGCCCAGGGTCTTGCCGCCATCATGACTGAGGAGTCAGAAGAAACG
GTCCTGTACATTGAGCACCGCTATGTCTGTTCTGAGTGCAACCAGCTCTATGGATCCCTG
GAGGAGGTGCTCATGCATCAGAACTCCCATGTGCCCCAGCAGCACTTTGAGTTGGTGGGT
GTGGCCGACCCTGGAGTCACTGTGGCCACAGAGGCAGCTTCTGGCACCGGCCTCTATCAG
ACCCTGGTGCAGGAGAGCCAGTACCAGTGCCTGGAGTGTGGGCAGCTGTTGATGTCACCC
AGCCAGCTCCTGGAGCATCAGGAGCTACACCTGAAGATGATGGCACCCCATGAGGCAGTG
CCCGCTGAGCCACCACCCAAGGCGCCCCCCCTGAGCTCCAGTACTATCCACTATGAGTGT
GTGGATTGCAAGGCTCTCTTTGCCAGCCAGGAGCTCTGGCTGAGCCACCGGCAGACGCAC
CTCCGGGCCACTCCCACTAAACCTCCAGCTC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ATTGGGAGCGAGAGCGAGGCTGCGGAGCAGACGAGAGGGGACGGCGGGAGCTAGAGAGGG
CGCAGCGCTAGGGTGGCCGTGCCAGGGGAGCGGCTGCCCGGGCCCGGGCCCGGGCCGTGC
GAGACGGCGGAGGCAGCCCAGGGTCTTGCCGCCATCATGACTGAGGAGTCAGAAGAAACG
GTCCTGTACATTGAGCACCGCTATGTCTGTTCTGAGTGCAACCAGCTCTATGGATCCCTG
GAGGAGGTGCTCATGCATCAGAACTCCCATGTGCCCCAGCAGCACTTTGAGTTGGTGGGT
GTGGCCGACCCTGGAGTCACTGTGGCCACAGAGGCAGCTTCTGGCACCGGCCTCTATCAG
ACCCTGGTGCAGGAGAGCCAGTACCAGTGCCTGGAGTGTGGGCAGCTGTTGATGTCACCC
AGCCAGCTCCTGGAGCATCAGGAGCTACACCTGAAGATGATGGCACCCCATGAGGCAGTG
CCCGCTGAGCCACCACCCAAGGCGCCCCCCCTGAGCTCCAGTACTATCCACTATGAGTGT
GTGGATTGCAAGGCTCTCTTTGCCAGCCAGGAGCTCTGGCTGAGCCACCGGCAGACGCAC
CTCCGGGCCACTCCCACTAAACCTCCAGCTC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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412-537, - strand, RNAmicro p=0.999972 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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412-537, - strand, RNAmicro p=0.999972 |
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382-600, BW967975 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BW967975.1|), blast E-value=0, identity=96.35% |
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382-631, CJ002540 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ002540.1|), blast E-value=0, identity=97.2% |
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382-626, LB01221.CR_F06 GC_BGC-12 Bos taurus cDNA clone IMAGE (gb|DV844957.1|),
blast E-value=0, identity=92.65% |
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382-626, LB02954.CR_L21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE356062.1|),
blast E-value=0, identity=92.65% |
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382-626, LB029110.CR_M19 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369528.1|),
blast E-value=0, identity=92.65% |
|
382-626, LB03083.CR_E23 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE386589.1|),
blast E-value=0, identity=92.65% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
382-600, BW967975 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BW967975.1|), blast E-value=0, identity=96.35% |
|
382-631, CJ002540 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ002540.1|), blast E-value=0, identity=97.2% |
|
382-626, LB01221.CR_F06 GC_BGC-12 Bos taurus cDNA clone IMAGE (gb|DV844957.1|),
blast E-value=0, identity=92.65% |
|
382-626, LB02954.CR_L21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE356062.1|),
blast E-value=0, identity=92.65% |
|
382-626, LB029110.CR_M19 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369528.1|),
blast E-value=0, identity=92.65% |
|
382-626, LB03083.CR_E23 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE386589.1|),
blast E-value=0, identity=92.65% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map