Non-Coding RNA Search

Liv1-LVRM1F020039

Sequence:


               
               CCTGACCTGTCTGCTGTCTTCCCCCATCCCTGCATCCCCACCTCTGCCTCTCCCTTCCCA
GTCTCAGCCATGCACATGGTGGAGAAAAGGCCCAGAAGAGTCTTGGCCTCTTAACAAGCG
CTTGGGAATCCACCACCCCCCCTCCCCAGTCATATGAGCTGTGATTCCCCTACTCCGCCC
CAGAACCCGACCCCTTCCCCCCCCCACCTCGGTGATGTGGGGGATGTGTGTGTGTGTGTG
TGTGTGTGTGTTTCACTGCGTGAATGTGTGAGCAAGTACACGTGGTGGGGGCGGAGCCGG
GGGGGGGGTACTCAGGAGCGTCACGCACCTGCTCTAGAGAGGCAGCCGTCCCAGTCCCTG
CTTTGGAAGTGGGGGACAGGGCCCTCTCCTGGGGGCCATTGGTGCTAATGAGGGGGATGG
CCTTGACGTGGGTGCTTAGCATGCCTCCCCAGTATTGGCCCGGGGCACTAGGGCAGGCAG
AGTGGGGCAGTGGGTGCAGTATTGGCGGGGGGAGGGGCTGCCGGGACTAGGAGAAGGGGG
GCCAGGCCAGGACAAAGGGGTGCCAGAGCCATGACCACTACCCCGCCCCCACCACCCGCC
TCTCCATCTCAGTATTCCCCCTCCCATCACTCATAACAGACATACCTCATCCAGCCTCCT
CCCTGCTCAGACTTGGGGGAGGGTGGGGGTGGAAGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGACCTGTCTGCTGTCTTCCCCCATCCCTGCATCCCCACCTCTGCCTCTCCCTTCCCA
GTCTCAGCCATGCACATGGTGGAGAAAAGGCCCAGAAGAGTCTTGGCCTCTTAACAAGCG
CTTGGGAATCCACCACCCCCCCTCCCCAGTCATATGAGCTGTGATTCCCCTACTCCGCCC
CAGAACCCGACCCCTTCCCCCCCCCACCTCGGTGATGTGGGGGATGTGTGTGTGTGTGTG
TGTGTGTGTGTTTCACTGCGTGAATGTGTGAGCAAGTACACGTGGTGGGGGCGGAGCCGG
GGGGGGGGTACTCAGGAGCGTCACGCACCTGCTCTAGAGAGGCAGCCGTCCCAGTCCCTG
CTTTGGAAGTGGGGGACAGGGCCCTCTCCTGGGGGCCATTGGTGCTAATGAGGGGGATGG
CCTTGACGTGGGTGCTTAGCATGCCTCCCCAGTATTGGCCCGGGGCACTAGGGCAGGCAG
AGTGGGGCAGTGGGTGCAGTATTGGCGGGGGGAGGGGCTGCCGGGACTAGGAGAAGGGGG
GCCAGGCCAGGACAAAGGGGTGCCAGAGCCATGACCACTACCCCGCCCCCACCACCCGCC
TCTCCATCTCAGTATTCCCCCTCCCATCACTCATAACAGACATACCTCATCCAGCCTCCT
CCCTGCTCAGACTTGGGGGAGGGTGGGGGTGGAAGAACC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               40-151, - strand, RNAz p=0.999552
               

               
               192-465, - strand, RNAz p=0.98347
               

               
               583-699, - strand, RNAz p=0.938985

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-151, - strand, RNAz p=0.999552
               

               
               192-465, - strand, RNAz p=0.98347
               

               
               583-699, - strand, RNAz p=0.938985

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-699, gnl|bosTau2|chr19 (34511964-34511277)
               

               
               1-699, gnl|Hg17|chr17 (35501332-35501986)
               

               
               1-699, gnl|Mm7|chr11 (98875745-98876369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-699, gnl|bosTau2|chr19 (34511964-34511277)
               

               
               1-699, gnl|Hg17|chr17 (35501332-35501986)
               

               
               1-699, gnl|Mm7|chr11 (98875745-98876369)

	40-151, - strand, RNAz p=0.999552
	192-465, - strand, RNAz p=0.98347
	583-699, - strand, RNAz p=0.938985

	1-699, gnl\|bosTau2\|chr19 (34511964-34511277)
	1-699, gnl\|Hg17\|chr17 (35501332-35501986)
	1-699, gnl\|Mm7\|chr11 (98875745-98876369)