Non-Coding RNA Search

Liv1-LVRM1F120207

Sequence:


               
               CACTTGATCTTGGCCTGGCAACTCAACCGTGGTGATGCCTTCCTCTGGAAGCAGGTGGGT
GGTCCGAGAGGTAGGCATGGGGGCGCCAGGCCCCGAATGAGAAGGGGTCTGGGAAAGGGA
GGGTGGGTGAGCCAGGGGTGGACGGGGGCGGCTGAGGGCTGTCTGGCTGTGTCTGGGAGG
AGGGGCAGGTGTGGGGAGGCTACGTTGCAGGGTGAGTCTCTCTCTTTGGGATCTGGGGCA
GAAGGCACTGCAGCAGGGAGGGAAGGCTCCAGGACCCGAGCCTTCCTGTGCTCTGTCCCC
ACAGGCCCGTCTCCAGCTCTTTAGCCTGAGGCCCTTGAGAGAGTGCGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTGATCTTGGCCTGGCAACTCAACCGTGGTGATGCCTTCCTCTGGAAGCAGGTGGGT
GGTCCGAGAGGTAGGCATGGGGGCGCCAGGCCCCGAATGAGAAGGGGTCTGGGAAAGGGA
GGGTGGGTGAGCCAGGGGTGGACGGGGGCGGCTGAGGGCTGTCTGGCTGTGTCTGGGAGG
AGGGGCAGGTGTGGGGAGGCTACGTTGCAGGGTGAGTCTCTCTCTTTGGGATCTGGGGCA
GAAGGCACTGCAGCAGGGAGGGAAGGCTCCAGGACCCGAGCCTTCCTGTGCTCTGTCCCC
ACAGGCCCGTCTCCAGCTCTTTAGCCTGAGGCCCTTGAGAGAGTGCGGCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-141, + strand, RNAz p=0.990837
               

               
               181-299, - strand, RNAz p=0.894413

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-141, + strand, RNAz p=0.990837
               

               
               181-299, - strand, RNAz p=0.894413

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-344, gnl|bosTau2|chr5 (26314923-26315249)
               

               
               1-344, gnl|Hg17|chr12 (47462674-47462326)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-344, gnl|bosTau2|chr5 (26314923-26315249)
               

               
               1-344, gnl|Hg17|chr12 (47462674-47462326)

	1-141, + strand, RNAz p=0.990837
	181-299, - strand, RNAz p=0.894413

	1-344, gnl\|bosTau2\|chr5 (26314923-26315249)
	1-344, gnl\|Hg17\|chr12 (47462674-47462326)