Non-Coding RNA Search

Liv1-LVRM1G120092

Sequence:


               
               TGGAATAGCAATGGCGGAAGGAGAAGAGGTCCCGCCACCGCCAACGTCGAGCGGCGACGG
CTGGGAAAAGGATCTTGAAGAAGCTCTGGATGCAGGAGGTTGTGATCTTGAAACTTTGAG
AAATATAATTCAAGGGAGACCACTGCCTGCTGATTTGAGGGCTAAAGTTTGGAAGATTGC
TCTAAATGTTGCAGGAAAAGGCGATAGTTTGGCATCTTGGGATGGTATTTTAGACCTGCC
AGAACAGAACACTATTCACAAAGATTGTCAGGAGTTTATTGACCAGCTTTCAGTGCCGGA
AGAGAAGGCAGCAGAATTACTTTTGGATATTGAATCTGTAATTACCTTTTATTGTAAATC
ACGTAACATTAAATATAGCACGTCCCTTAGCTGGATACATCTACTCAAACCGTTGGTGCA
TCTTCAACTGCCACGCAGCGATTTATACAACTGCTTTTATGCTATCATGAATAAGTACAT
TCCCAGGTAATATGATTTAGTTATTATAGTTTTAAAAATGAATCAGGGTTTAGTTTGTTT
TGAACTAAAATTGTTAGATTTACTTTGGTGGTAAAGTAAAAAGTTCATATAATTTTTAAG
GTTGTTCGAATCATAATTGTTATGTGACTTTATTTGTGTGGTTATAAACATTTTTTAAAG
AATTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAATAGCAATGGCGGAAGGAGAAGAGGTCCCGCCACCGCCAACGTCGAGCGGCGACGG
CTGGGAAAAGGATCTTGAAGAAGCTCTGGATGCAGGAGGTTGTGATCTTGAAACTTTGAG
AAATATAATTCAAGGGAGACCACTGCCTGCTGATTTGAGGGCTAAAGTTTGGAAGATTGC
TCTAAATGTTGCAGGAAAAGGCGATAGTTTGGCATCTTGGGATGGTATTTTAGACCTGCC
AGAACAGAACACTATTCACAAAGATTGTCAGGAGTTTATTGACCAGCTTTCAGTGCCGGA
AGAGAAGGCAGCAGAATTACTTTTGGATATTGAATCTGTAATTACCTTTTATTGTAAATC
ACGTAACATTAAATATAGCACGTCCCTTAGCTGGATACATCTACTCAAACCGTTGGTGCA
TCTTCAACTGCCACGCAGCGATTTATACAACTGCTTTTATGCTATCATGAATAAGTACAT
TCCCAGGTAATATGATTTAGTTATTATAGTTTTAAAAATGAATCAGGGTTTAGTTTGTTT
TGAACTAAAATTGTTAGATTTACTTTGGTGGTAAAGTAAAAAGTTCATATAATTTTTAAG
GTTGTTCGAATCATAATTGTTATGTGACTTTATTTGTGTGGTTATAAACATTTTTTAAAG
AATTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47195444|emb|CAF94867.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47195444|emb|CAF94867.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               63-186, + strand, RNAz p=0.987544
               

               
               63-186, + strand, RNAz p=0.914932

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-186, + strand, RNAz p=0.987544
               

               
               63-186, + strand, RNAz p=0.914932

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648032, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648032, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               63-186, gnl|bosTau2|chr1 (24025840-24025963)
               

               
               63-186, gnl|canFam2|chr33 (9872982-9873119)
               

               
               63-186, gnl|danRer3|chr6 (12050098-12050242)
               

               
               63-186, gnl|dasNov1|scaffold_106887 (1214-1073)
               

               
               63-186, gnl|echTel1|scaffold_222011 (2249-2390)
               

               
               63-186, gnl|fr1|chrUn (42232809-42232693)
               

               
               63-186, gnl|galGal2|chr1 (78912125-78912260)
               

               
               63-186, gnl|hg17|chr3 (101481176-101481317)
               

               
               63-186, gnl|Hg17|chr3 (101481182-101481305)
               

               
               63-186, gnl|mm7|chr16 (57078453-57078314)
               

               
               63-186, gnl|Mm7|chr16 (57078445-57078322)
               

               
               63-186, gnl|monDom2|scaffold_50 (10437718-10437577)
               

               
               63-186, gnl|panTro1|chr2 (102715403-102715544)
               

               
               63-186, gnl|rheMac2|chr2 (20487623-20487764)
               

               
               63-186, gnl|rn3|chr11 (44299365-44299504)
               

               
               63-186, gnl|tetNig1|chr1_random (1285641-1285505)
               

               
               63-186, gnl|xenTro1|scaffold_116 (1807355-1807480)
               


               
               275-667, gnl|bosTau2|chr1 (24029116-24029507)
               

               
               275-667, gnl|Hg17|chr3 (101485134-101485524)
               

               
               275-667, gnl|Mm7|chr16 (57072606-57072230)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-186, gnl|bosTau2|chr1 (24025840-24025963)
               

               
               63-186, gnl|canFam2|chr33 (9872982-9873119)
               

               
               63-186, gnl|danRer3|chr6 (12050098-12050242)
               

               
               63-186, gnl|dasNov1|scaffold_106887 (1214-1073)
               

               
               63-186, gnl|echTel1|scaffold_222011 (2249-2390)
               

               
               63-186, gnl|fr1|chrUn (42232809-42232693)
               

               
               63-186, gnl|galGal2|chr1 (78912125-78912260)
               

               
               63-186, gnl|hg17|chr3 (101481176-101481317)
               

               
               63-186, gnl|Hg17|chr3 (101481182-101481305)
               

               
               63-186, gnl|mm7|chr16 (57078453-57078314)
               

               
               63-186, gnl|Mm7|chr16 (57078445-57078322)
               

               
               63-186, gnl|monDom2|scaffold_50 (10437718-10437577)
               

               
               63-186, gnl|panTro1|chr2 (102715403-102715544)
               

               
               63-186, gnl|rheMac2|chr2 (20487623-20487764)
               

               
               63-186, gnl|rn3|chr11 (44299365-44299504)
               

               
               63-186, gnl|tetNig1|chr1_random (1285641-1285505)
               

               
               63-186, gnl|xenTro1|scaffold_116 (1807355-1807480)
               


               
               275-667, gnl|bosTau2|chr1 (24029116-24029507)
               

               
               275-667, gnl|Hg17|chr3 (101485134-101485524)
               

               
               275-667, gnl|Mm7|chr16 (57072606-57072230)

	63-186, + strand, RNAz p=0.987544
	63-186, + strand, RNAz p=0.914932

	63-186, gnl\|bosTau2\|chr1 (24025840-24025963)
	63-186, gnl\|canFam2\|chr33 (9872982-9873119)
	63-186, gnl\|danRer3\|chr6 (12050098-12050242)
	63-186, gnl\|dasNov1\|scaffold_106887 (1214-1073)
	63-186, gnl\|echTel1\|scaffold_222011 (2249-2390)
	63-186, gnl\|fr1\|chrUn (42232809-42232693)
	63-186, gnl\|galGal2\|chr1 (78912125-78912260)
	63-186, gnl\|hg17\|chr3 (101481176-101481317)
	63-186, gnl\|Hg17\|chr3 (101481182-101481305)
	63-186, gnl\|mm7\|chr16 (57078453-57078314)
	63-186, gnl\|Mm7\|chr16 (57078445-57078322)
	63-186, gnl\|monDom2\|scaffold_50 (10437718-10437577)
	63-186, gnl\|panTro1\|chr2 (102715403-102715544)
	63-186, gnl\|rheMac2\|chr2 (20487623-20487764)
	63-186, gnl\|rn3\|chr11 (44299365-44299504)
	63-186, gnl\|tetNig1\|chr1_random (1285641-1285505)
	63-186, gnl\|xenTro1\|scaffold_116 (1807355-1807480)

	275-667, gnl\|bosTau2\|chr1 (24029116-24029507)
	275-667, gnl\|Hg17\|chr3 (101485134-101485524)
	275-667, gnl\|Mm7\|chr16 (57072606-57072230)