Lng1-LNG010001C07
|
ATGTCCATATCCTGTGACCTAGTAATCCCCCTTCTGGGAATCTGTCCAAAGGAAATAATC
CAAAGGCAGGGAATGGCTCTGTACATCAAGATGCTCATCGCAGCATTATTTACAACTAAA
AATTGGAAGCAAAGTAAAGACTTTACAGTATGAGACTAGCTAATTAAATTAAGCAGCGTT
TCTTCAATGGAGCATTCTGCAGCCCTTAAAAGTATAATACCCAATGCTATGCATGTGGGA
AGCTGTTCCCACTAAGTGAAAAGGGCCGAATATACCATGATTATGACTGTGTAAAAGTTC
TTGGGAAAATGCAGATGCTCGGAGATTGAAAAGTGAAGGGAGGATCTCAGGTTTGTGGGA
GGAAAGTCCCATTTCCTGGGAGTCACGGTGGCCGAGGAGGAGCAGACTGGGGTGCAGAGA
TCAGTCGTTAGTTCCCGAGGTGTGAGGTCAGAGATGTCTGCAAGAATCCAAAGGGATGGG
TCTGAAGCTCAGGAAAGAGGCCAGGCCTCAGGTGGAAGTTTCAGAGCCATTGGCTTGTAG
GTGGTGTTTAAACCCCTGAGTGTGGATGACCGCAGGCAGGGAAGAGCAGAGGCAGGGAGT
CTCACCCATGGGCGCTTTTAGAGTCCCTTGCAGATCCCTCTAGGGGAGTGAATCAGGATC
TCTGGGGTGCTGGCCCTTCAGCATTTATTCAGAGCTCCCCAGGTAATTCCCGGGGCGGGG
GGCGGGATCTGGGTTAAAGTGAGAGAGAAGTGGCAGGGTTGAAGCCAAAGCTTTCTGTGG
CT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGTCCATATCCTGTGACCTAGTAATCCCCCTTCTGGGAATCTGTCCAAAGGAAATAATC
CAAAGGCAGGGAATGGCTCTGTACATCAAGATGCTCATCGCAGCATTATTTACAACTAAA
AATTGGAAGCAAAGTAAAGACTTTACAGTATGAGACTAGCTAATTAAATTAAGCAGCGTT
TCTTCAATGGAGCATTCTGCAGCCCTTAAAAGTATAATACCCAATGCTATGCATGTGGGA
AGCTGTTCCCACTAAGTGAAAAGGGCCGAATATACCATGATTATGACTGTGTAAAAGTTC
TTGGGAAAATGCAGATGCTCGGAGATTGAAAAGTGAAGGGAGGATCTCAGGTTTGTGGGA
GGAAAGTCCCATTTCCTGGGAGTCACGGTGGCCGAGGAGGAGCAGACTGGGGTGCAGAGA
TCAGTCGTTAGTTCCCGAGGTGTGAGGTCAGAGATGTCTGCAAGAATCCAAAGGGATGGG
TCTGAAGCTCAGGAAAGAGGCCAGGCCTCAGGTGGAAGTTTCAGAGCCATTGGCTTGTAG
GTGGTGTTTAAACCCCTGAGTGTGGATGACCGCAGGCAGGGAAGAGCAGAGGCAGGGAGT
CTCACCCATGGGCGCTTTTAGAGTCCCTTGCAGATCCCTCTAGGGGAGTGAATCAGGATC
TCTGGGGTGCTGGCCCTTCAGCATTTATTCAGAGCTCCCCAGGTAATTCCCGGGGCGGGG
GGCGGGATCTGGGTTAAAGTGAGAGAGAAGTGGCAGGGTTGAAGCCAAAGCTTTCTGTGG
CT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-345, gnl|bosTau2|chr10 (10287145-10287504) |
|
1-345, gnl|canFam2|chr30 (35588098-35588484) |
|
1-345, gnl|dasNov1|scaffold_26956 (5815-6187) |
|
1-345, gnl|hg17|chr15 (66684519-66684911) |
|
1-345, gnl|Hg17|chr15 (66684691-66685056) |
|
1-345, gnl|loxAfr1|scaffold_63294 (9869-9477) |
|
1-345, gnl|mm7|chr9 (62540587-62540212) |
|
1-345, gnl|panTro1|chr16 (67200710-67201102) |
|
1-345, gnl|rheMac2|chr7 (47217786-47218173) |
|
1-345, gnl|rn3|chr8 (66693622-66693246) |
| |
|
536-782, gnl|bosTau2|chr10 (10288027-10288265) |
|
536-782, gnl|canFam2|chr30 (35588848-35589005) |
|
536-782, gnl|dasNov1|scaffold_26956 (6538-6721) |
|
536-782, gnl|hg17|chr15 (66685612-66685794) |
|
536-782, gnl|panTro1|chr16 (67201795-67201977) |
|
536-782, gnl|rheMac2|chr7 (47218877-47219060) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-345, gnl|bosTau2|chr10 (10287145-10287504) |
|
1-345, gnl|canFam2|chr30 (35588098-35588484) |
|
1-345, gnl|dasNov1|scaffold_26956 (5815-6187) |
|
1-345, gnl|hg17|chr15 (66684519-66684911) |
|
1-345, gnl|Hg17|chr15 (66684691-66685056) |
|
1-345, gnl|loxAfr1|scaffold_63294 (9869-9477) |
|
1-345, gnl|mm7|chr9 (62540587-62540212) |
|
1-345, gnl|panTro1|chr16 (67200710-67201102) |
|
1-345, gnl|rheMac2|chr7 (47217786-47218173) |
|
1-345, gnl|rn3|chr8 (66693622-66693246) |
| |
|
536-782, gnl|bosTau2|chr10 (10288027-10288265) |
|
536-782, gnl|canFam2|chr30 (35588848-35589005) |
|
536-782, gnl|dasNov1|scaffold_26956 (6538-6721) |
|
536-782, gnl|hg17|chr15 (66685612-66685794) |
|
536-782, gnl|panTro1|chr16 (67201795-67201977) |
|
536-782, gnl|rheMac2|chr7 (47218877-47219060) |
