Non-Coding RNA Search

Lng1-LNG010002D10

Sequence:


               
               attaagccatgcatgtctaagtacgcacggccggtacagtgaaactgcgaatggctcatt
aaatcagttatggttcctttggtcgctcgTATTAAATCTGCCATTTGACTACAAAATCAC
ATCTCTCCCACATACAAAATAAACTTAGCCTCTCCCCAGAAAGTCTCATCTTATTATGGA
TGGTCTAGGATCTCACCATCTAAATCAGGTGTGAATCAGGTTTTGGGATAAAGTTCCTGA
GATATCCTCCTTAAGTATAGTACCTGAAGAAGTCTGAATTTACAAGACAAGATAGCTGTC
CTACACACAAACTCAATAAATGACAAAGAAAGAAAGGATAAGTGTAGCAAATATTCACAA
ATAACAAATACTGGAGAGGATGTGGAGATTTCAGATCGTTCTAATCCCAGCTGTGATCAG
CCTGCAATTTCATGATCAGCCTGCAATTTCATGATCAGCCTTCAATTTCAttggtgggag
tgtgaattggtacaaccactatggaaaatggtgtggaagtacctcagaaaactaaatata
gatctaccatatgacccagcaatcctactcttgggcatgtatccggacaaaactttcctt
gaaaaagatacatgcacctgtatgttcattgcagcactattcacaatagccaagacatgg
aaacaacctaaatgtctattgacagatgaatggattaagaagatgtggtaggagttctct
tcctggctcaggggttaacgaacctgactaggatccatgaagacgcgggttc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               attaagccatgcatgtctaagtacgcacggccggtacagtgaaactgcgaatggctcatt
aaatcagttatggttcctttggtcgctcgTATTAAATCTGCCATTTGACTACAAAATCAC
ATCTCTCCCACATACAAAATAAACTTAGCCTCTCCCCAGAAAGTCTCATCTTATTATGGA
TGGTCTAGGATCTCACCATCTAAATCAGGTGTGAATCAGGTTTTGGGATAAAGTTCCTGA
GATATCCTCCTTAAGTATAGTACCTGAAGAAGTCTGAATTTACAAGACAAGATAGCTGTC
CTACACACAAACTCAATAAATGACAAAGAAAGAAAGGATAAGTGTAGCAAATATTCACAA
ATAACAAATACTGGAGAGGATGTGGAGATTTCAGATCGTTCTAATCCCAGCTGTGATCAG
CCTGCAATTTCATGATCAGCCTGCAATTTCATGATCAGCCTTCAATTTCAttggtgggag
tgtgaattggtacaaccactatggaaaatggtgtggaagtacctcagaaaactaaatata
gatctaccatatgacccagcaatcctactcttgggcatgtatccggacaaaactttcctt
gaaaaagatacatgcacctgtatgttcattgcagcactattcacaatagccaagacatgg
aaacaacctaaatgtctattgacagatgaatggattaagaagatgtggtaggagttctct
tcctggctcaggggttaacgaacctgactaggatccatgaagacgcgggttc

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57048153|ref|XP_536274.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57048153|ref|XP_536274.1|

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               158-591, + strand, RNAz p=0.76238
               

               
               158-591, - strand, RNAz p=0.76238
               

               
               158-276, + strand, RNAz p=0.712252
               

               
               158-276, - strand, RNAz p=0.712252

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-591, + strand, RNAz p=0.76238
               

               
               158-591, - strand, RNAz p=0.76238
               

               
               158-276, + strand, RNAz p=0.712252
               

               
               158-276, - strand, RNAz p=0.712252

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               93-276, gnl|bosTau2|chr5 (61139289-61139475)
               

               
               93-276, gnl|hg17|chr12 (9085227-9085294)
               

               
               93-276, gnl|oryCun1|scaffold_116348 (7417-7350)
               

               
               93-276, gnl|panTro1|chrUn_random (58015665-58015598)
               

               
               93-276, gnl|rheMac2|chr11 (9182198-9182265)
               


               
               433-708, gnl|bosTau2|chr4 (53125580-53125861)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-276, gnl|bosTau2|chr5 (61139289-61139475)
               

               
               93-276, gnl|hg17|chr12 (9085227-9085294)
               

               
               93-276, gnl|oryCun1|scaffold_116348 (7417-7350)
               

               
               93-276, gnl|panTro1|chrUn_random (58015665-58015598)
               

               
               93-276, gnl|rheMac2|chr11 (9182198-9182265)
               


               
               433-708, gnl|bosTau2|chr4 (53125580-53125861)

	158-591, + strand, RNAz p=0.76238
	158-591, - strand, RNAz p=0.76238
	158-276, + strand, RNAz p=0.712252
	158-276, - strand, RNAz p=0.712252

	93-276, gnl\|bosTau2\|chr5 (61139289-61139475)
	93-276, gnl\|hg17\|chr12 (9085227-9085294)
	93-276, gnl\|oryCun1\|scaffold_116348 (7417-7350)
	93-276, gnl\|panTro1\|chrUn_random (58015665-58015598)
	93-276, gnl\|rheMac2\|chr11 (9182198-9182265)

	433-708, gnl\|bosTau2\|chr4 (53125580-53125861)