Non-Coding RNA Search

Lng1-LNG010004E07

Sequence:


               
               GGATTATCAATGGTCGTGTTGCAAAAAAAAAATACCATCATCAAGGGGGAGATAGAGCTT
TTAAATAGCTTTTAAATAGACATATCTGGTGGCTATCTTTATAGATCTATTGGATTCAAA
GCAAAAACATTTTGGGGGTCATTCACTTAGGGTATATGTCTATATGGATACACCTGTATA
TACACATACCTGTGCTAATGGTGGGGGACAAATCTGACGTATGGAAAGCTGATCGGCATT
TACCACTGATGGGAGGACAGGGATGCTAAAGCCAAAAGCTGCTGGAAGCCATGGGGCCAT
CTGGATGTTCCGAACAAGGTCAGCTTTCCTGCGCCTTAGCCAGCCATCCCATGAGAACTT
TGGGCTGTCCTTTTCGCACTCACTTCATTATGTTTCAAGTTCTGCTACCTTTATCTTGCC
CACATCCTGGGGATCCTAAGAGGATTCATTTGTGAGAGTTTTGTAAATTGCTTTGTAGAT
TAAAATTCTCTATAAAGTGTTTATTACTACGGGCAGTCCTGACCGGGAGAGATTAGACTT
CTGACAGTTGCCATTTCTAGGCTCAGAGAAACGTGTCTGTGTTATTCACCCACAAGGCTG
GCTCACACTGATAGCGTTGATCAGGTGATGTGCTTCCTGATCTGCTTCCCTGTACCGATG
ACTTGTCTTTCAGCCTTAGCCTGGCCTCACCTTTCTCCTTCCTCTGCTTCCCTCCTTTTC
CTGGGGCCTCCCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTATCAATGGTCGTGTTGCAAAAAAAAAATACCATCATCAAGGGGGAGATAGAGCTT
TTAAATAGCTTTTAAATAGACATATCTGGTGGCTATCTTTATAGATCTATTGGATTCAAA
GCAAAAACATTTTGGGGGTCATTCACTTAGGGTATATGTCTATATGGATACACCTGTATA
TACACATACCTGTGCTAATGGTGGGGGACAAATCTGACGTATGGAAAGCTGATCGGCATT
TACCACTGATGGGAGGACAGGGATGCTAAAGCCAAAAGCTGCTGGAAGCCATGGGGCCAT
CTGGATGTTCCGAACAAGGTCAGCTTTCCTGCGCCTTAGCCAGCCATCCCATGAGAACTT
TGGGCTGTCCTTTTCGCACTCACTTCATTATGTTTCAAGTTCTGCTACCTTTATCTTGCC
CACATCCTGGGGATCCTAAGAGGATTCATTTGTGAGAGTTTTGTAAATTGCTTTGTAGAT
TAAAATTCTCTATAAAGTGTTTATTACTACGGGCAGTCCTGACCGGGAGAGATTAGACTT
CTGACAGTTGCCATTTCTAGGCTCAGAGAAACGTGTCTGTGTTATTCACCCACAAGGCTG
GCTCACACTGATAGCGTTGATCAGGTGATGTGCTTCCTGATCTGCTTCCCTGTACCGATG
ACTTGTCTTTCAGCCTTAGCCTGGCCTCACCTTTCTCCTTCCTCTGCTTCCCTCCTTTTC
CTGGGGCCTCCCCAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               592-710, - strand, RNAz p=0.743584

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               592-710, - strand, RNAz p=0.743584

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               131-730, gnl|bosTau2|chr12 (7480356-7480939)
               

               
               131-730, gnl|canFam2|chr22 (7418907-7418561)
               

               
               131-730, gnl|dasNov1|scaffold_29227 (4286-4668)
               

               
               131-730, gnl|echTel1|scaffold_278010 (34161-34538)
               

               
               131-730, gnl|hg17|chr13 (46337922-46338276)
               

               
               131-730, gnl|Hg17|chr13 (46337921-46338500)
               

               
               131-730, gnl|mm7|chr14 (69354721-69354387)
               

               
               131-730, gnl|oryCun1|scaffold_120699 (3866-3549)
               

               
               131-730, gnl|panTro1|chr14_random (12372097-12372451)
               

               
               131-730, gnl|rheMac2|chr17 (25686385-25686737)
               

               
               131-730, gnl|rn3|chr15 (55517615-55517282)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-730, gnl|bosTau2|chr12 (7480356-7480939)
               

               
               131-730, gnl|canFam2|chr22 (7418907-7418561)
               

               
               131-730, gnl|dasNov1|scaffold_29227 (4286-4668)
               

               
               131-730, gnl|echTel1|scaffold_278010 (34161-34538)
               

               
               131-730, gnl|hg17|chr13 (46337922-46338276)
               

               
               131-730, gnl|Hg17|chr13 (46337921-46338500)
               

               
               131-730, gnl|mm7|chr14 (69354721-69354387)
               

               
               131-730, gnl|oryCun1|scaffold_120699 (3866-3549)
               

               
               131-730, gnl|panTro1|chr14_random (12372097-12372451)
               

               
               131-730, gnl|rheMac2|chr17 (25686385-25686737)
               

               
               131-730, gnl|rn3|chr15 (55517615-55517282)

	131-730, gnl\|bosTau2\|chr12 (7480356-7480939)
	131-730, gnl\|canFam2\|chr22 (7418907-7418561)
	131-730, gnl\|dasNov1\|scaffold_29227 (4286-4668)
	131-730, gnl\|echTel1\|scaffold_278010 (34161-34538)
	131-730, gnl\|hg17\|chr13 (46337922-46338276)
	131-730, gnl\|Hg17\|chr13 (46337921-46338500)
	131-730, gnl\|mm7\|chr14 (69354721-69354387)
	131-730, gnl\|oryCun1\|scaffold_120699 (3866-3549)
	131-730, gnl\|panTro1\|chr14_random (12372097-12372451)
	131-730, gnl\|rheMac2\|chr17 (25686385-25686737)
	131-730, gnl\|rn3\|chr15 (55517615-55517282)