Non-Coding RNA Search

Lng1-LNG010004F12

Sequence:


               
               TTAATTTGAAGGTTTTATAATTTCAAGGCCTCCAAAGAGATCGGTCAACATCTGTTACCC
ATCCCCACCCTGGGGGGCTGCCAGATACATCCTTGGTGCCCGCCAGGGCTGGACATCCCA
CACCTGCCACCGAGGTGGCACCCAGACACCTGATTCACTTCTGCCACTGTGTACCCAATG
ACCCCATCCCTCCTGGCGCTGTGTTTCTGACCCAGCTTGTCTCCTCTGCTGAGGAACCCT
GGCTGGGGTGGCTCCCTCCTGTCTTAGTGGTGGGGACCCCGGGGCTCAGAGGGGTTGGGG
AGGGGGCAGAGCTTGCACTTGAGCCCCGATGCCCCAGGCCTGTAGGGACCCTGGTCTGCT
GGTCCTATTTTAGAGGGTAGCGTGTAGGTCAGCTGGGGAGACAATAGAGAATGCGGCACC
CACAATGAGCCATTGTTCCCACGGTGGCTTCTGGGCCAGGGCAGGGCCCAGCAGATGATC
TGTGGCCCCCACAGGGGGCTGGACCTTTGCTTCTTTGGCTGGATTTTTCCAGCGCTTGTG
TACACAGGAGCAAACAGGCACTCAGAGGAAGGGAGAGAGAGCCAGGCAGACAGCTGACTC
TGGCTCGGGGCAGTCATTTCGCAGGGGTGATAAGTCAGAGGGCCCGGGAGGACCCTCGTG
CTGGGGGTGGGCCTGGTCAGCGCCCCCTCCAGTCTATACTGGTTTATATCTGTTCCCATC
ACCTTAAAACACTCACCCTTCCCCCCGAGGTTCCATTACCCTTCCTGTTTCACAGAAGCA
GATGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATTTGAAGGTTTTATAATTTCAAGGCCTCCAAAGAGATCGGTCAACATCTGTTACCC
ATCCCCACCCTGGGGGGCTGCCAGATACATCCTTGGTGCCCGCCAGGGCTGGACATCCCA
CACCTGCCACCGAGGTGGCACCCAGACACCTGATTCACTTCTGCCACTGTGTACCCAATG
ACCCCATCCCTCCTGGCGCTGTGTTTCTGACCCAGCTTGTCTCCTCTGCTGAGGAACCCT
GGCTGGGGTGGCTCCCTCCTGTCTTAGTGGTGGGGACCCCGGGGCTCAGAGGGGTTGGGG
AGGGGGCAGAGCTTGCACTTGAGCCCCGATGCCCCAGGCCTGTAGGGACCCTGGTCTGCT
GGTCCTATTTTAGAGGGTAGCGTGTAGGTCAGCTGGGGAGACAATAGAGAATGCGGCACC
CACAATGAGCCATTGTTCCCACGGTGGCTTCTGGGCCAGGGCAGGGCCCAGCAGATGATC
TGTGGCCCCCACAGGGGGCTGGACCTTTGCTTCTTTGGCTGGATTTTTCCAGCGCTTGTG
TACACAGGAGCAAACAGGCACTCAGAGGAAGGGAGAGAGAGCCAGGCAGACAGCTGACTC
TGGCTCGGGGCAGTCATTTCGCAGGGGTGATAAGTCAGAGGGCCCGGGAGGACCCTCGTG
CTGGGGGTGGGCCTGGTCAGCGCCCCCTCCAGTCTATACTGGTTTATATCTGTTCCCATC
ACCTTAAAACACTCACCCTTCCCCCCGAGGTTCCATTACCCTTCCTGTTTCACAGAAGCA
GATGGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               371-539, + strand, RNAz p=0.940841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-539, + strand, RNAz p=0.940841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               182-539, gnl|bosTau2|chr14 (3787391-3787748)
               

               
               182-539, gnl|Hg17|chr8 (134349313-134348949)
               

               
               182-539, gnl|Mm7|chr15 (67035889-67035585)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-539, gnl|bosTau2|chr14 (3787391-3787748)
               

               
               182-539, gnl|Hg17|chr8 (134349313-134348949)
               

               
               182-539, gnl|Mm7|chr15 (67035889-67035585)

	182-539, gnl\|bosTau2\|chr14 (3787391-3787748)
	182-539, gnl\|Hg17\|chr8 (134349313-134348949)
	182-539, gnl\|Mm7\|chr15 (67035889-67035585)