Non-Coding RNA Search

Lng1-LNG010004H12

Sequence:


               
               ACCTCTTGGGAGTTCCCTGGGTGGTCTAGTGGTTAGGACTCAGTGCTTTCACCTCTGAGG
CACGGGTTCAGTCCTTGGTCTGGGAACTGAGATCCCACGTGAAACCACTGCATGCTGCAG
CAGAAAAAAAAAAAGTTTCTCACCTCTTGAGCCAAGGCTCTTACAGCTCAACTGCAGATT
CTCAAGCCATCAGGAGCTCTCTTCCCTTTATTCCCTTTCCATCCCCAAGTGCCCTGCTTT
AGCCTTCCTCTAAATTTACATATCCTGAAAGAATTAGTAAGTTTACATTCCCTTCTTGCA
GATCATCCTGGAAGTCTGAGCGCTCAAAGCCACCCCTAAAAGACCTGGGCCAGGACGATG
ATGCTCTACCCTTGATTGAAGAGGTTCTGGCCAGTCAGGAGCAAGCAGCCAATGAGATGC
CCAGCCTGGTGGAGCCAGAACGGGAGGGGGCCACTGCTGAAGTCAGTGAGAGTGAAAAAA
AAACACAGGAAAGTAATCAAGAACCCCAAGCAGCCTGTACCCCTGAGGAACGCCGGCATA
ATCAACGAGAACGACTCAACCAGATCCTGCTCAACCTCCTTGAAAAAATCCCTGGGAAAA
ATGGTAAGAAGAATCAGACTCATATCTAGGGTTTAGGATGAATGGGGAATTAGCAGAGAG
GGAATGAAAAAGAACAACTTCTAATTACTTGCCTAGAATGAAAAATATTCTCTTAAAATG
GTATGGTTCTTTCATGGGCTTATGTTTAGATTTATTTTGGGAATGAAACTGTGGGAAGTA
ATAGGATCTCCTCCCTGGAGAACAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCTTGGGAGTTCCCTGGGTGGTCTAGTGGTTAGGACTCAGTGCTTTCACCTCTGAGG
CACGGGTTCAGTCCTTGGTCTGGGAACTGAGATCCCACGTGAAACCACTGCATGCTGCAG
CAGAAAAAAAAAAAGTTTCTCACCTCTTGAGCCAAGGCTCTTACAGCTCAACTGCAGATT
CTCAAGCCATCAGGAGCTCTCTTCCCTTTATTCCCTTTCCATCCCCAAGTGCCCTGCTTT
AGCCTTCCTCTAAATTTACATATCCTGAAAGAATTAGTAAGTTTACATTCCCTTCTTGCA
GATCATCCTGGAAGTCTGAGCGCTCAAAGCCACCCCTAAAAGACCTGGGCCAGGACGATG
ATGCTCTACCCTTGATTGAAGAGGTTCTGGCCAGTCAGGAGCAAGCAGCCAATGAGATGC
CCAGCCTGGTGGAGCCAGAACGGGAGGGGGCCACTGCTGAAGTCAGTGAGAGTGAAAAAA
AAACACAGGAAAGTAATCAAGAACCCCAAGCAGCCTGTACCCCTGAGGAACGCCGGCATA
ATCAACGAGAACGACTCAACCAGATCCTGCTCAACCTCCTTGAAAAAATCCCTGGGAAAA
ATGGTAAGAAGAATCAGACTCATATCTAGGGTTTAGGATGAATGGGGAATTAGCAGAGAG
GGAATGAAAAAGAACAACTTCTAATTACTTGCCTAGAATGAAAAATATTCTCTTAAAATG
GTATGGTTCTTTCATGGGCTTATGTTTAGATTTATTTTGGGAATGAAACTGTGGGAAGTA
ATAGGATCTCCTCCCTGGAGAACAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864377|ref|XP_616733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864377|ref|XP_616733.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               357-476, + strand, RNAz p=0.722747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-476, + strand, RNAz p=0.722747

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               15-86, , RaveNnA Score=29.64

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               15-86, , RaveNnA Score=29.64

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-138, gnl|bosTau2|chr23 (17686639-17686508)
               


               
               7-135, gnl|bosTau2|chr13 (43556755-43556630)
               


               
               278-805, gnl|bosTau2|chr3 (9619186-9618674)
               

               
               278-805, gnl|Hg17|chr1 (152121278-152120764)
               

               
               278-805, gnl|Mm7|chr3 (89189753-89190255)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-138, gnl|bosTau2|chr23 (17686639-17686508)
               


               
               7-135, gnl|bosTau2|chr13 (43556755-43556630)
               


               
               278-805, gnl|bosTau2|chr3 (9619186-9618674)
               

               
               278-805, gnl|Hg17|chr1 (152121278-152120764)
               

               
               278-805, gnl|Mm7|chr3 (89189753-89190255)

	3-138, gnl\|bosTau2\|chr23 (17686639-17686508)

	7-135, gnl\|bosTau2\|chr13 (43556755-43556630)

	278-805, gnl\|bosTau2\|chr3 (9619186-9618674)
	278-805, gnl\|Hg17\|chr1 (152121278-152120764)
	278-805, gnl\|Mm7\|chr3 (89189753-89190255)