Lng1-LNG010006F11
|
GGTTGCATTGATATTCGTGTTAGACTGGCTCATAGTTTGGGAAGGTAGATCCTGAATAAT
GAAGACGACAGTGTTAAGGGAATATTAGCGGATGCTCTGGGGGCTCTGAGAGCCTATAGC
AGGGGGTGCCGACTGGTGCAGTGTCAGCGGTGGTCTCAAAGGAGCTGTGATTTAAGGCCA
AAGGTGCATGGGGGAAGGGTGGTGAGCAAGGCAAGGGAAGAGGACTCATAACAGCCCTAG
GAGGGTTTGCTGGGCAGACCGGCTACACATGAGAAAGCCCGGTAGCGAAGAGGTCGGTTT
GTTTGAGATGCTCCTTGGCATTTAGTTGGCTGAAGAGGAGTCACAGCCTGGGCCTGGGAG
CTTTCTTAGGCATGTTGTGGAGCTTGGTCTTTGTCCAGAGGAGCAGACCATTGTGTGCGG
GGTCAGCAAGACAGAGGTGAGCCCCGAGATCTGGGAGAACTTCTGCGCCACAGGTGCGGC
CAAAACACAAAGACCCCAAAGATGGCAAGACTGAGGCCAGGGGTCAGCATCTAAAGGGCC
TCCCAGGGCCAGAGAAGTCATAGTAATGAACTCAGCAGGAAGACCCCTGGGAGGTGCGGG
GACAGGGGTGCCCCGGGGAACACCTATCCTGGGTCAAGGGAGCAGCGCCCTGcagctcca
gccagctgttgccctgtgggaatggggccctggtgttgccacatcttctgatcattgaga
gaatccagccatctggattcttatgtgaGAGATTTTCTAATTAAAACATTTATTGTCAGC
CACATAAAATTTTTCAAAAACACTTCTTTGGGTGGACCCAGACCACTTGATTTGGCCTGG
CT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTTGCATTGATATTCGTGTTAGACTGGCTCATAGTTTGGGAAGGTAGATCCTGAATAAT
GAAGACGACAGTGTTAAGGGAATATTAGCGGATGCTCTGGGGGCTCTGAGAGCCTATAGC
AGGGGGTGCCGACTGGTGCAGTGTCAGCGGTGGTCTCAAAGGAGCTGTGATTTAAGGCCA
AAGGTGCATGGGGGAAGGGTGGTGAGCAAGGCAAGGGAAGAGGACTCATAACAGCCCTAG
GAGGGTTTGCTGGGCAGACCGGCTACACATGAGAAAGCCCGGTAGCGAAGAGGTCGGTTT
GTTTGAGATGCTCCTTGGCATTTAGTTGGCTGAAGAGGAGTCACAGCCTGGGCCTGGGAG
CTTTCTTAGGCATGTTGTGGAGCTTGGTCTTTGTCCAGAGGAGCAGACCATTGTGTGCGG
GGTCAGCAAGACAGAGGTGAGCCCCGAGATCTGGGAGAACTTCTGCGCCACAGGTGCGGC
CAAAACACAAAGACCCCAAAGATGGCAAGACTGAGGCCAGGGGTCAGCATCTAAAGGGCC
TCCCAGGGCCAGAGAAGTCATAGTAATGAACTCAGCAGGAAGACCCCTGGGAGGTGCGGG
GACAGGGGTGCCCCGGGGAACACCTATCCTGGGTCAAGGGAGCAGCGCCCTGcagctcca
gccagctgttgccctgtgggaatggggccctggtgttgccacatcttctgatcattgaga
gaatccagccatctggattcttatgtgaGAGATTTTCTAATTAAAACATTTATTGTCAGC
CACATAAAATTTTTCAAAAACACTTCTTTGGGTGGACCCAGACCACTTGATTTGGCCTGG
CT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
643-842, BP438795 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438795.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
643-842, BP438795 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438795.1|), blast E-value=0, identity=100% |
|
95-422, gnl|bosTau2|chr18 (18172569-18172899) |
| |
|
498-842, gnl|bosTau2|chr18 (18174113-18174464) |
|
498-842, gnl|canFam2|chr2 (67681980-67681684) |
|
498-842, gnl|hg17|chr16 (49149213-49149544) |
|
498-842, gnl|Hg17|chr16 (49149292-49149655) |
|
498-842, gnl|loxAfr1|scaffold_4705 (71748-72078) |
|
498-842, gnl|Mm7|chr8 (87122153-87122552) |
|
498-842, gnl|panTro1|chrUn_random (12970320-12970653) |
|
498-842, gnl|rheMac2|chr20 (48781809-48782141) |
|
498-842, gnl|rn3|chr19 (19826562-19826287) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
95-422, gnl|bosTau2|chr18 (18172569-18172899) |
| |
|
498-842, gnl|bosTau2|chr18 (18174113-18174464) |
|
498-842, gnl|canFam2|chr2 (67681980-67681684) |
|
498-842, gnl|hg17|chr16 (49149213-49149544) |
|
498-842, gnl|Hg17|chr16 (49149292-49149655) |
|
498-842, gnl|loxAfr1|scaffold_4705 (71748-72078) |
|
498-842, gnl|Mm7|chr8 (87122153-87122552) |
|
498-842, gnl|panTro1|chrUn_random (12970320-12970653) |
|
498-842, gnl|rheMac2|chr20 (48781809-48782141) |
|
498-842, gnl|rn3|chr19 (19826562-19826287) |
