Non-Coding RNA Search

Lng1-LNG010011A06

Sequence:


               
               AGCTCCGACTGAATCCCTAGCCTGGGAACCTCCATATTGCCGCAGGGGCAACCCTAAAAC
AAACAAAACAAAACCCCTGAATTCTTCTGTCATTTCTCCCTTTTAACTTTTTGTGGCCTT
CACTTTGTTTATCTTTCTTTCTTGGTGATGGCAGGCTCAGTGCTGCAGATGCACAGACAT
ACCTCTTACCCCCTTCCCTGCATACTGAGGGCTGCTTCCCCTTGGGGTACTGAGTGGGAC
TCAGCTAGAACCTCACCATCCCAGCCCTTGGGACCTTTCTGCTAGAGGGACTTGAATATC
CATCAAGCTATAAAGGGCCAAATATGACGTCTGTAAACATCTCATCTCAATTGCAGTTCC
AGGAGAGGGTGGAATTTTAGTCAGTAAGCCTTTATTGAATGTCTAATAGATACCGTTGGG
AAATTTTTATACAGTACCCATTCAAACCCACCATTCCTAANGGAATGCCTTAAGAAAGTT
AGCAAGAATTATAACGATAAGTGATTTCTCCTTTTCCTAAAGCTTCTGTAACTTAGTTGG
CACTCAGTTATCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCGACTGAATCCCTAGCCTGGGAACCTCCATATTGCCGCAGGGGCAACCCTAAAAC
AAACAAAACAAAACCCCTGAATTCTTCTGTCATTTCTCCCTTTTAACTTTTTGTGGCCTT
CACTTTGTTTATCTTTCTTTCTTGGTGATGGCAGGCTCAGTGCTGCAGATGCACAGACAT
ACCTCTTACCCCCTTCCCTGCATACTGAGGGCTGCTTCCCCTTGGGGTACTGAGTGGGAC
TCAGCTAGAACCTCACCATCCCAGCCCTTGGGACCTTTCTGCTAGAGGGACTTGAATATC
CATCAAGCTATAAAGGGCCAAATATGACGTCTGTAAACATCTCATCTCAATTGCAGTTCC
AGGAGAGGGTGGAATTTTAGTCAGTAAGCCTTTATTGAATGTCTAATAGATACCGTTGGG
AAATTTTTATACAGTACCCATTCAAACCCACCATTCCTAANGGAATGCCTTAAGAAAGTT
AGCAAGAATTATAACGATAAGTGATTTCTCCTTTTCCTAAAGCTTCTGTAACTTAGTTGG
CACTCAGTTATCCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               223-324, - strand, RNAz p=0.631328
               

               
               438-556, + strand, RNAz p=0.968822

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-324, - strand, RNAz p=0.631328
               

               
               438-556, + strand, RNAz p=0.968822

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               83-324, gnl|bosTau2|chr19 (31320202-31319948)
               

               
               83-324, gnl|canFam2|chr9 (28391511-28391929)
               

               
               83-324, gnl|echTel1|scaffold_317669 (29358-28888)
               

               
               83-324, gnl|hg17|chr17 (44281207-44281598)
               

               
               83-324, gnl|Hg17|chr17 (44281369-44281589)
               

               
               83-324, gnl|loxAfr1|scaffold_15470 (29136-28699)
               

               
               83-324, gnl|panTro1|chr19_random (43230855-43231246)
               

               
               83-324, gnl|rheMac2|chr16 (33072382-33072755)
               


               
               353-556, gnl|bosTau2|chr19 (31320677-31320479)
               

               
               353-556, gnl|Hg17|chr17 (44280862-44281056)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-324, gnl|bosTau2|chr19 (31320202-31319948)
               

               
               83-324, gnl|canFam2|chr9 (28391511-28391929)
               

               
               83-324, gnl|echTel1|scaffold_317669 (29358-28888)
               

               
               83-324, gnl|hg17|chr17 (44281207-44281598)
               

               
               83-324, gnl|Hg17|chr17 (44281369-44281589)
               

               
               83-324, gnl|loxAfr1|scaffold_15470 (29136-28699)
               

               
               83-324, gnl|panTro1|chr19_random (43230855-43231246)
               

               
               83-324, gnl|rheMac2|chr16 (33072382-33072755)
               


               
               353-556, gnl|bosTau2|chr19 (31320677-31320479)
               

               
               353-556, gnl|Hg17|chr17 (44280862-44281056)

	223-324, - strand, RNAz p=0.631328
	438-556, + strand, RNAz p=0.968822

	83-324, gnl\|bosTau2\|chr19 (31320202-31319948)
	83-324, gnl\|canFam2\|chr9 (28391511-28391929)
	83-324, gnl\|echTel1\|scaffold_317669 (29358-28888)
	83-324, gnl\|hg17\|chr17 (44281207-44281598)
	83-324, gnl\|Hg17\|chr17 (44281369-44281589)
	83-324, gnl\|loxAfr1\|scaffold_15470 (29136-28699)
	83-324, gnl\|panTro1\|chr19_random (43230855-43231246)
	83-324, gnl\|rheMac2\|chr16 (33072382-33072755)

	353-556, gnl\|bosTau2\|chr19 (31320677-31320479)
	353-556, gnl\|Hg17\|chr17 (44280862-44281056)