Non-Coding RNA Search

Lng1-LNG010012F08

Sequence:


               
               TATTTATGACTCGTCTCCCTCCACTAGAAGCCGAGCCCCATGGGGTCAAGGACTTTGCCT
CTTTGGCTCACATCTGCATCCCTGGCACCTCTTTTTGTTCACATCTACATGCCTGGCACC
GTGTTTGGCTCATGGTGGGTGCTCAGTAAATATTTGTGGAGTAAATGAATGAATTTCCAT
GCTGGCAAAAAAGAAATAATCATATCCTTTACTAATGAGGAAAGAAAAGGGGAAAAAAAC
CTGGACTTAGAACAACTTTTCATGAACAGATCCAATTTGCAAAAATGGGACTGACGTTTA
AAAGCTATTTTTCTTCCTGAAGCTCAGCTTCTGGGAAAGTCACAGCTGCCAGCTTAGATG
GTGGTTTTAACTGCCCAGTTACAAATTCTGCGCAGTTGTACGTATTGGCAGAGCTCAGCT
TCCTTAAATGCTGCAGGATCAGTAAGGAAATGGTGATTTTCCTTATTGATTTCATGCCAG
TTCCTCTTTTGTGAAAATTCCCATGTGCTGTTCAATGGAACATGTACAATAAAACCCGAA
CATCGGGGGCCAGAAATTGAGTCTCTCATGCTCCTCTCTGGCCAGGTGATGTTAAGCCAT
TTCTACTTCCAGGCTGGAGCGTTCAATTGTTTTCCCCTTTAAATTTAGCAGAATGTTTGT
TCCTCCCGCTGCTTTGTACATATGCTCCTTTTGATCTGGGAAACAGCTCATTCCTGGATG
AACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTATGACTCGTCTCCCTCCACTAGAAGCCGAGCCCCATGGGGTCAAGGACTTTGCCT
CTTTGGCTCACATCTGCATCCCTGGCACCTCTTTTTGTTCACATCTACATGCCTGGCACC
GTGTTTGGCTCATGGTGGGTGCTCAGTAAATATTTGTGGAGTAAATGAATGAATTTCCAT
GCTGGCAAAAAAGAAATAATCATATCCTTTACTAATGAGGAAAGAAAAGGGGAAAAAAAC
CTGGACTTAGAACAACTTTTCATGAACAGATCCAATTTGCAAAAATGGGACTGACGTTTA
AAAGCTATTTTTCTTCCTGAAGCTCAGCTTCTGGGAAAGTCACAGCTGCCAGCTTAGATG
GTGGTTTTAACTGCCCAGTTACAAATTCTGCGCAGTTGTACGTATTGGCAGAGCTCAGCT
TCCTTAAATGCTGCAGGATCAGTAAGGAAATGGTGATTTTCCTTATTGATTTCATGCCAG
TTCCTCTTTTGTGAAAATTCCCATGTGCTGTTCAATGGAACATGTACAATAAAACCCGAA
CATCGGGGGCCAGAAATTGAGTCTCTCATGCTCCTCTCTGGCCAGGTGATGTTAAGCCAT
TTCTACTTCCAGGCTGGAGCGTTCAATTGTTTTCCCCTTTAAATTTAGCAGAATGTTTGT
TCCTCCCGCTGCTTTGTACATATGCTCCTTTTGATCTGGGAAACAGCTCATTCCTGGATG
AACTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               390-535, - strand, RNAz p=0.99366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-535, - strand, RNAz p=0.99366

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               118-726, gnl|bosTau2|chr5 (68217507-68216878)
               

               
               118-726, gnl|Hg17|chr22 (38644105-38644699)
               

               
               118-726, gnl|Mm7|chr15 (80682891-80683518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-726, gnl|bosTau2|chr5 (68217507-68216878)
               

               
               118-726, gnl|Hg17|chr22 (38644105-38644699)
               

               
               118-726, gnl|Mm7|chr15 (80682891-80683518)

	118-726, gnl\|bosTau2\|chr5 (68217507-68216878)
	118-726, gnl\|Hg17\|chr22 (38644105-38644699)
	118-726, gnl\|Mm7\|chr15 (80682891-80683518)