Non-Coding RNA Search

Lng1-LNG010014B01

Sequence:


               
               TATTAGTCTTGTTTCTAATCCTTTTGTTCCTGCTCTCCTGACAGATAAGTGGTTCAAACC
AATACAGTCTCTCCCCCTCCCCCAGGTCAGGAACAGTCCTGGCTCAGCCCTGAGGTGTGG
AGGCGTATGAGTTCAGTGGAGCAGATGCACACTCCAGATACCTTGGGCCAAAATAAAGTC
TCCCGTGCTGATGTATGTCTACAGTTCCAGGAGGCTTTAACTTTCCCTGTCCGTAAGATT
CAGGATTCTGTAGCCATGAACTTAGAGTTTGGGGGTAAAAATGACAGGATTGCCCCAAGT
ACTGAATTAATTAAGCAAATTCGATGCTGCCAGGCAGAACAGAGAAACTATTAGATGGAT
ATTTAAAATGCTATCTTTACTGACACACTCCAGATATTACAAAGCTATCTTTTATTCCTC
TCAAGAGGCTGTAATTTTACCAACACCAAGTTAGCCTCTTCCTTTTCCCCACTTTTAAAT
TAAGTGTCTGAAGTTGGATGTGCTTGGGTTTCCTGAGGCAGAATGAATCCCAGATGGCTT
CCATTTCAAATCATCGGTAACAAGATACTGTTTTGTTTCCCCTGGGTTTCCTTTCACTGT
GATGGCGGTGTGGGGGGGGGGGGGGGCATTCTTTGGATAATGCTGACCTATGCAGAATTA
CCAAATGGTGGTCGTTGCTAGAAAGGAAGATATTTTCTTGGTTCCCACTGTGATGTAGTG
TCCTCGGTGTACTCTCTCTCCCTGTGAGTATTCCCCCCACCCCCTTGCACACCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAGTCTTGTTTCTAATCCTTTTGTTCCTGCTCTCCTGACAGATAAGTGGTTCAAACC
AATACAGTCTCTCCCCCTCCCCCAGGTCAGGAACAGTCCTGGCTCAGCCCTGAGGTGTGG
AGGCGTATGAGTTCAGTGGAGCAGATGCACACTCCAGATACCTTGGGCCAAAATAAAGTC
TCCCGTGCTGATGTATGTCTACAGTTCCAGGAGGCTTTAACTTTCCCTGTCCGTAAGATT
CAGGATTCTGTAGCCATGAACTTAGAGTTTGGGGGTAAAAATGACAGGATTGCCCCAAGT
ACTGAATTAATTAAGCAAATTCGATGCTGCCAGGCAGAACAGAGAAACTATTAGATGGAT
ATTTAAAATGCTATCTTTACTGACACACTCCAGATATTACAAAGCTATCTTTTATTCCTC
TCAAGAGGCTGTAATTTTACCAACACCAAGTTAGCCTCTTCCTTTTCCCCACTTTTAAAT
TAAGTGTCTGAAGTTGGATGTGCTTGGGTTTCCTGAGGCAGAATGAATCCCAGATGGCTT
CCATTTCAAATCATCGGTAACAAGATACTGTTTTGTTTCCCCTGGGTTTCCTTTCACTGT
GATGGCGGTGTGGGGGGGGGGGGGGGCATTCTTTGGATAATGCTGACCTATGCAGAATTA
CCAAATGGTGGTCGTTGCTAGAAAGGAAGATATTTTCTTGGTTCCCACTGTGATGTAGTG
TCCTCGGTGTACTCTCTCTCCCTGTGAGTATTCCCCCCACCCCCTTGCACACCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               376-495, - strand, RNAz p=0.625445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-495, - strand, RNAz p=0.625445

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               103-776, gnl|bosTau2|chr11 (48866585-48867224)
               

               
               103-776, gnl|canFam2|chr10 (71338536-71339414)
               

               
               103-776, gnl|dasNov1|scaffold_1499 (62932-62107)
               

               
               103-776, gnl|echTel1|scaffold_276321 (13912-13104)
               

               
               103-776, gnl|hg17|chr2 (69609532-69610358)
               

               
               103-776, gnl|Hg17|chr2 (69610545-69609909)
               

               
               103-776, gnl|loxAfr1|scaffold_6446 (47037-46145)
               

               
               103-776, gnl|mm7|chr6 (87067102-87066320)
               

               
               103-776, gnl|Mm7|chr6 (87066147-87066748)
               

               
               103-776, gnl|monDom2|scaffold_1 (96277970-96278794)
               

               
               103-776, gnl|oryCun1|scaffold_198933 (30608-31420)
               

               
               103-776, gnl|panTro1|chr12 (71846923-71847748)
               

               
               103-776, gnl|rheMac2|chr13 (69718902-69719724)
               

               
               103-776, gnl|rn3|chr4 (121392562-121391778)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-776, gnl|bosTau2|chr11 (48866585-48867224)
               

               
               103-776, gnl|canFam2|chr10 (71338536-71339414)
               

               
               103-776, gnl|dasNov1|scaffold_1499 (62932-62107)
               

               
               103-776, gnl|echTel1|scaffold_276321 (13912-13104)
               

               
               103-776, gnl|hg17|chr2 (69609532-69610358)
               

               
               103-776, gnl|Hg17|chr2 (69610545-69609909)
               

               
               103-776, gnl|loxAfr1|scaffold_6446 (47037-46145)
               

               
               103-776, gnl|mm7|chr6 (87067102-87066320)
               

               
               103-776, gnl|Mm7|chr6 (87066147-87066748)
               

               
               103-776, gnl|monDom2|scaffold_1 (96277970-96278794)
               

               
               103-776, gnl|oryCun1|scaffold_198933 (30608-31420)
               

               
               103-776, gnl|panTro1|chr12 (71846923-71847748)
               

               
               103-776, gnl|rheMac2|chr13 (69718902-69719724)
               

               
               103-776, gnl|rn3|chr4 (121392562-121391778)

	103-776, gnl\|bosTau2\|chr11 (48866585-48867224)
	103-776, gnl\|canFam2\|chr10 (71338536-71339414)
	103-776, gnl\|dasNov1\|scaffold_1499 (62932-62107)
	103-776, gnl\|echTel1\|scaffold_276321 (13912-13104)
	103-776, gnl\|hg17\|chr2 (69609532-69610358)
	103-776, gnl\|Hg17\|chr2 (69610545-69609909)
	103-776, gnl\|loxAfr1\|scaffold_6446 (47037-46145)
	103-776, gnl\|mm7\|chr6 (87067102-87066320)
	103-776, gnl\|Mm7\|chr6 (87066147-87066748)
	103-776, gnl\|monDom2\|scaffold_1 (96277970-96278794)
	103-776, gnl\|oryCun1\|scaffold_198933 (30608-31420)
	103-776, gnl\|panTro1\|chr12 (71846923-71847748)
	103-776, gnl\|rheMac2\|chr13 (69718902-69719724)
	103-776, gnl\|rn3\|chr4 (121392562-121391778)